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The map label for this gene is lsrB [H]

Identifier: 220932820

GI number: 220932820

Start: 2140902

End: 2141858

Strand: Reverse

Name: lsrB [H]

Synonym: Hore_19860

Alternate gene names: 220932820

Gene position: 2141858-2140902 (Counterclockwise)

Preceding gene: 220932821

Following gene: 220932819

Centisome position: 83.08

GC content: 43.47

Gene sequence:

>957_bases
ATGGTGGTTTGTCCTCTATCCCTCTCCCTATCTGTTAGTGCCGGGAAGCTACCCCCTAAACCCCTTACCATTGCCTTTGT
TCCCAAATCCCTGGATAATCCCATTTTCCTGGATACCCTCGAAGCTGCCCAGAAAGAAGCCCGGAGGCTTGGAGTCAGGC
TCGAATGGGTAGCCCCCTTTACCACCAGTACAGAAGGCCAGATAAAAGTAGTAAAAAATTTAATACAGAGACGGGTTGAT
GGCATCATTATTAGTGCCAATGATTCCAATGCCCTTAAGGAAATAATAAATAAAGCAGTAAAAAGTGGTATTGCTGTAGC
TACTTTTGATTCTGATGTCCCCGGGAGTGACAGGCTTTTTTATGTTGGTACAGATAATTGGAGGGCAGGCTACGAACTGG
GTAAAGCCCTCCTTCAGGTTCTGAAACGAAAGGGGATAAAAACTGAAAAATATAAGGTAATGGTACTGAGTGGCGGTAAA
GAGGCCTTAAATTTAAAAAAACGGGTTAAGGGTTTTGCTAAAGCAGTTGAAGAAGAGATTGATATCGAAATCAAGGATAT
TTTATACTGCAATGACGATTTTCAGCTGGCCAATGAACTGGTAGAAAATTATATTAAGTCCCATCCTGATATTGACATTA
TTTTATTTGTCGGCGGGTGGCCCTTTTATGTTCCCCCTGATGCCATGCCTCGTTTTCAAAAATGGGCCCGACAGGGGGGA
ATTGCGATAGGAATAGATATCTTTTATTCAGCCCTTGTTTTACAGAAGGAGGGTATGATCCAGTACCTGGTGGGTCAGGA
TTTCAGTGGGATGGGGCAGTTGAGTCTTCGTTATCTGGTCAGGTTCTTGAGGAGTGGGCAGAAGCCCCCGGTTATTATTA
AAACCGGTATTGAGCATGCCAACACCAGTAATATTGATAGGCTACTTAAAGTTCATAAACCATGGGGTGTCAGATAA

Upstream 100 bases:

>100_bases
TTTGGAGAAAAAAATAAACCGGGAGGGGATGTAATTGTTGACTGAAAGGTCATAGGCCCGGTTAAAGTGGCTGGCAAAAA
TAATAATCTTTTCAGTGTTA

Downstream 100 bases:

>100_bases
TTTGTCTGGCAGATAGGGGTTGATGTTATGAAGGCCTTAAAAAAAATCATGCAAACATTATCTTCGTTATTTCAGATACA
GACCCTCAGAACAAAGCTGG

Product: sugar ABC transporter periplasmic protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MVVCPLSLSLSVSAGKLPPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPFTTSTEGQIKVVKNLIQRRVD
GIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLFYVGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGK
EALNLKKRVKGFAKAVEEEIDIEIKDILYCNDDFQLANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGG
IAIGIDIFYSALVLQKEGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHANTSNIDRLLKVHKPWGVR

Sequences:

>Translated_318_residues
MVVCPLSLSLSVSAGKLPPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPFTTSTEGQIKVVKNLIQRRVD
GIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLFYVGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGK
EALNLKKRVKGFAKAVEEEIDIEIKDILYCNDDFQLANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGG
IAIGIDIFYSALVLQKEGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHANTSNIDRLLKVHKPWGVR
>Mature_318_residues
MVVCPLSLSLSVSAGKLPPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPFTTSTEGQIKVVKNLIQRRVD
GIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLFYVGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGK
EALNLKKRVKGFAKAVEEEIDIEIKDILYCNDDFQLANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGG
IAIGIDIFYSALVLQKEGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHANTSNIDRLLKVHKPWGVR

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=210, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35439; Mature: 35439

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVCPLSLSLSVSAGKLPPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPF
CEEECEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCEEEEEECC
TTSTEGQIKVVKNLIQRRVDGIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLF
CCCCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEE
YVGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGKEALNLKKRVKGFAKAVEEEI
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
DIEIKDILYCNDDFQLANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGG
CEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCC
IAIGIDIFYSALVLQKEGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHA
EEEEHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC
NTSNIDRLLKVHKPWGVR
CCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MVVCPLSLSLSVSAGKLPPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPF
CEEECEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCEEEEEECC
TTSTEGQIKVVKNLIQRRVDGIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLF
CCCCCCHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEE
YVGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGKEALNLKKRVKGFAKAVEEEI
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
DIEIKDILYCNDDFQLANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGG
CEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCC
IAIGIDIFYSALVLQKEGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHA
EEEEHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC
NTSNIDRLLKVHKPWGVR
CCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA