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The map label for this gene is whiA

Identifier: 220932422

GI number: 220932422

Start: 1699305

End: 1700246

Strand: Reverse

Name: whiA

Synonym: Hore_15860

Alternate gene names: 220932422

Gene position: 1700246-1699305 (Counterclockwise)

Preceding gene: 220932423

Following gene: 220932421

Centisome position: 65.95

GC content: 38.75

Gene sequence:

>942_bases
ATGTCTTTTACTGACCAGGTAAAACATGAGGTTTCCAGGCTTGAAAGTAACAATAAAATGTGTCAACTGGCAGAATTATC
TGCCCTGATAATGATGAATGGCTCTATTCAGATAATTAATAAAAACCTGGCAGTAAAGGTACGGCTTTATCATGGTGACC
TCGCCAGGAAGGTTTATAAATTGATAAAAGAACGGTTTGAACTCAATATTGAAATTATGGTAAGGCGTCGTAACCATTTT
TCAACCTACCAGAATATTTATGATTTATTTTTACCTCCCCAGCCCGGGATTGAAGTCTTCTTGAAAAAGGTTGGAGTCCT
TGATGAGGACCATAATCTATTGTTCAGGATAAAAAAGGAACTTGTGACCAGTAAGAGCTGTCAAAAATCATATGTTAGAG
GGGCTTTTCTTGGAGGGGGTTCTGTCAATAACCCCCGTGGGGAGTACCACCTGGAGTTCAGGTGTGAACATGAGAGTTTT
GCTGAGGATTTATTGATGTTGTTGAAACGGTTTGGCCTTGAGGGTCATCTTACCGAACACCGTAAAAAATATGTGGTTTA
TTTTAAGAGTTTCTCTGAAGTGGCAACCATTTTAAATATAATTGGTGCCCATAAGGCCCTGTTAAAATTAGAAGATAATA
AGGTGTTAAAAGAGGTTAAAAACGGTGTAAACCGTAGGGTCAATTGTGAAACAGCCAATCTGGATAAAACAGTTAAAGCG
GCTATGCTTCAACTTGAAGATATAGAATTAATTGAAAAAACCCGGGGGCTGGAGACACTGTCAAATAGCCTTCAGGAAAT
TGCTATAATTAGGAAAAAATACCCTTATGCCAGTTTAAAGGAACTGGGTAAGCTACTGGACCCTCCCCTGAGTAAATCGG
GGGTAAATCACCGTTTAAGGAGGATAAAATCTATTGCTAATGAAATAAGGGGAGAGAGATAA

Upstream 100 bases:

>100_bases
TTAAAGGTGATCTGTTGTCCCGGGATGGTTATATCAGACATGATCCCTCTAAACTGGCTGAGACTATTTTAAAAGTATAT
CGAGGCAGGTGAACCATTTA

Downstream 100 bases:

>100_bases
ATGGATTTAAGGTTTGACCTTGATCTTAATCAGAAACAGGAACTGGTGATGACCCCGAAATTGAAGCTGGCTATAAAACT
TTTGCAGTATTCTTATCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSFTDQVKHEVSRLESNNKMCQLAELSALIMMNGSIQIINKNLAVKVRLYHGDLARKVYKLIKERFELNIEIMVRRRNHF
STYQNIYDLFLPPQPGIEVFLKKVGVLDEDHNLLFRIKKELVTSKSCQKSYVRGAFLGGGSVNNPRGEYHLEFRCEHESF
AEDLLMLLKRFGLEGHLTEHRKKYVVYFKSFSEVATILNIIGAHKALLKLEDNKVLKEVKNGVNRRVNCETANLDKTVKA
AMLQLEDIELIEKTRGLETLSNSLQEIAIIRKKYPYASLKELGKLLDPPLSKSGVNHRLRRIKSIANEIRGER

Sequences:

>Translated_313_residues
MSFTDQVKHEVSRLESNNKMCQLAELSALIMMNGSIQIINKNLAVKVRLYHGDLARKVYKLIKERFELNIEIMVRRRNHF
STYQNIYDLFLPPQPGIEVFLKKVGVLDEDHNLLFRIKKELVTSKSCQKSYVRGAFLGGGSVNNPRGEYHLEFRCEHESF
AEDLLMLLKRFGLEGHLTEHRKKYVVYFKSFSEVATILNIIGAHKALLKLEDNKVLKEVKNGVNRRVNCETANLDKTVKA
AMLQLEDIELIEKTRGLETLSNSLQEIAIIRKKYPYASLKELGKLLDPPLSKSGVNHRLRRIKSIANEIRGER
>Mature_312_residues
SFTDQVKHEVSRLESNNKMCQLAELSALIMMNGSIQIINKNLAVKVRLYHGDLARKVYKLIKERFELNIEIMVRRRNHFS
TYQNIYDLFLPPQPGIEVFLKKVGVLDEDHNLLFRIKKELVTSKSCQKSYVRGAFLGGGSVNNPRGEYHLEFRCEHESFA
EDLLMLLKRFGLEGHLTEHRKKYVVYFKSFSEVATILNIIGAHKALLKLEDNKVLKEVKNGVNRRVNCETANLDKTVKAA
MLQLEDIELIEKTRGLETLSNSLQEIAIIRKKYPYASLKELGKLLDPPLSKSGVNHRLRRIKSIANEIRGER

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_HALOH (B8CYG6)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002509330.1
- GeneID:   7312622
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_15860
- HOGENOM:   HBG485718
- OMA:   VTCPGPE
- ProtClustDB:   CLSK2806485
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR004042
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 36093; Mature: 35962

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTDQVKHEVSRLESNNKMCQLAELSALIMMNGSIQIINKNLAVKVRLYHGDLARKVYK
CCCHHHHHHHHHHHHCCCCEEHHHHHHHHEEECCCEEEEECCEEEEEEEECCHHHHHHHH
LIKERFELNIEIMVRRRNHFSTYQNIYDLFLPPQPGIEVFLKKVGVLDEDHNLLFRIKKE
HHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
LVTSKSCQKSYVRGAFLGGGSVNNPRGEYHLEFRCEHESFAEDLLMLLKRFGLEGHLTEH
HHHHHHHHHHHHCEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
RKKYVVYFKSFSEVATILNIIGAHKALLKLEDNKVLKEVKNGVNRRVNCETANLDKTVKA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCEECCCCCCCHHHHHH
AMLQLEDIELIEKTRGLETLSNSLQEIAIIRKKYPYASLKELGKLLDPPLSKSGVNHRLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RIKSIANEIRGER
HHHHHHHHHCCCC
>Mature Secondary Structure 
SFTDQVKHEVSRLESNNKMCQLAELSALIMMNGSIQIINKNLAVKVRLYHGDLARKVYK
CCHHHHHHHHHHHHCCCCEEHHHHHHHHEEECCCEEEEECCEEEEEEEECCHHHHHHHH
LIKERFELNIEIMVRRRNHFSTYQNIYDLFLPPQPGIEVFLKKVGVLDEDHNLLFRIKKE
HHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
LVTSKSCQKSYVRGAFLGGGSVNNPRGEYHLEFRCEHESFAEDLLMLLKRFGLEGHLTEH
HHHHHHHHHHHHCEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
RKKYVVYFKSFSEVATILNIIGAHKALLKLEDNKVLKEVKNGVNRRVNCETANLDKTVKA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCEECCCCCCCHHHHHH
AMLQLEDIELIEKTRGLETLSNSLQEIAIIRKKYPYASLKELGKLLDPPLSKSGVNHRLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RIKSIANEIRGER
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA