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The map label for this gene is ytdP [H]

Identifier: 220932373

GI number: 220932373

Start: 1644733

End: 1645980

Strand: Reverse

Name: ytdP [H]

Synonym: Hore_15370

Alternate gene names: 220932373

Gene position: 1645980-1644733 (Counterclockwise)

Preceding gene: 220932374

Following gene: 220932372

Centisome position: 63.84

GC content: 39.98

Gene sequence:

>1248_bases
ATGATAAATGAAAAAATCAAGGATAAATTAAAAAAGGTAATTAATATATATTCTTACGCAACAGGAATTGGCTGCCGGAT
TATCTCTACCGAAGATATGAAGGAGGTCTTTCAGCCTCCCCTGAGTAGACCCTCCTTCTGTAAAATGGTTCATAGTTGTA
GTCGCTGTGATGATGACTGTAAACAGTCTTACATTTATGGAGGGTTACAGGCGGAAAAACTGGGTGAACCCTATATTTAT
TTCTGCCCATATGGTCTTGTTAACTGGGCGGTACCCCTGTTTGGTGAAAAGAAGATGGAGTATTTCTTTACCGGGGGGCC
GGTCTTGCTGCACCCGGTTGATGATTTACTTATTGAGGATATTCTTAATCAGAACCCACTCCTGGGTTCCAGTTATAGAG
AGTTAAGGGAGCATTTAAATAAATTAATTCAGGTTGATACGGTCAGGGCCCGGTATCTGAGTGAACTTTTGATGGAACTA
TCAAAAAATGTAATGCTGGAGAGGGGTTACCGGCAAAACAGAAAACGGGAATATAATAGTATAAATGCCCGGATTGCAGA
AAAGATTCACGAACTGAAGCAGGGTAAAGATGACGAGGGTACTCTGTATCCAATTGAAAAGGAGCAGGAGTTAATTAAAA
AGGTAAAACTGGGTGATAAACAGGGGGCGCGGGCTATACTGAATGATATCCTTGGATTTGTATATTTTCAGAGTGGCAAC
AAATTAGATATTATCAAGGCCAAGGCGATTGAGTTGATGGTGGTTCTGGCCAGGGCTGCTATAGAAGTCGGGGCTGACCT
TGAAGTTATTTTCGGTCTGGAGAATACTTATTTTAATAAAATTGATAATATTGAGGATGTGAACCGGTTGTCAGAAATTC
TGGTCAGGGTTCTGGACCGGTTTATAGAGTGTATTTTTTCTATCAAAAATGTGAGAAAAAAGGATTTGATGTATAAGGCA
ATGAATTATATCAGGGACAATTATGCCCATAAATCTATAAGCCTGAATGAAGTAGCCGATGAAGTGGGATTAAGTGCGGC
CTATTTCAGTAAATTATTTAAAGAAGAGCTGGGTTTAACCTATACTGAGTATCTGAATAAAGTCCGGATTGAAGCCAGCA
AGGAGTTATTAAAGCAGGGTTGTTCCCTGGCCAGTATTGCCCAGACCGTTGGTTTTAATGACCAGAGTTATTTTTCCAAG
GTATTTAAAAAAATGGAGGGGTTATCACCGGGAAAATGGAGGGGATAA

Upstream 100 bases:

>100_bases
ACCTGGAATACCTGTTATGCAAAATGGGAAAGCAGATTACTAAACCCCTGAATGACCCTGAAAAGGGAAATCCATTATTT
TCTACCGGGATGTGCTTTTA

Downstream 100 bases:

>100_bases
GAGGTATCCCCTGTATGTTATGTATAATATTATTTATAGTGTTTATCGTGTATTAATAATATTCCCTGTGTATTAATAAT
ATTCCCTGATAAAATAATAC

Product: helix-turn-helix- domain containing protein AraC type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MINEKIKDKLKKVINIYSYATGIGCRIISTEDMKEVFQPPLSRPSFCKMVHSCSRCDDDCKQSYIYGGLQAEKLGEPYIY
FCPYGLVNWAVPLFGEKKMEYFFTGGPVLLHPVDDLLIEDILNQNPLLGSSYRELREHLNKLIQVDTVRARYLSELLMEL
SKNVMLERGYRQNRKREYNSINARIAEKIHELKQGKDDEGTLYPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQSGN
KLDIIKAKAIELMVVLARAAIEVGADLEVIFGLENTYFNKIDNIEDVNRLSEILVRVLDRFIECIFSIKNVRKKDLMYKA
MNYIRDNYAHKSISLNEVADEVGLSAAYFSKLFKEELGLTYTEYLNKVRIEASKELLKQGCSLASIAQTVGFNDQSYFSK
VFKKMEGLSPGKWRG

Sequences:

>Translated_415_residues
MINEKIKDKLKKVINIYSYATGIGCRIISTEDMKEVFQPPLSRPSFCKMVHSCSRCDDDCKQSYIYGGLQAEKLGEPYIY
FCPYGLVNWAVPLFGEKKMEYFFTGGPVLLHPVDDLLIEDILNQNPLLGSSYRELREHLNKLIQVDTVRARYLSELLMEL
SKNVMLERGYRQNRKREYNSINARIAEKIHELKQGKDDEGTLYPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQSGN
KLDIIKAKAIELMVVLARAAIEVGADLEVIFGLENTYFNKIDNIEDVNRLSEILVRVLDRFIECIFSIKNVRKKDLMYKA
MNYIRDNYAHKSISLNEVADEVGLSAAYFSKLFKEELGLTYTEYLNKVRIEASKELLKQGCSLASIAQTVGFNDQSYFSK
VFKKMEGLSPGKWRG
>Mature_415_residues
MINEKIKDKLKKVINIYSYATGIGCRIISTEDMKEVFQPPLSRPSFCKMVHSCSRCDDDCKQSYIYGGLQAEKLGEPYIY
FCPYGLVNWAVPLFGEKKMEYFFTGGPVLLHPVDDLLIEDILNQNPLLGSSYRELREHLNKLIQVDTVRARYLSELLMEL
SKNVMLERGYRQNRKREYNSINARIAEKIHELKQGKDDEGTLYPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQSGN
KLDIIKAKAIELMVVLARAAIEVGADLEVIFGLENTYFNKIDNIEDVNRLSEILVRVLDRFIECIFSIKNVRKKDLMYKA
MNYIRDNYAHKSISLNEVADEVGLSAAYFSKLFKEELGLTYTEYLNKVRIEASKELLKQGCSLASIAQTVGFNDQSYFSK
VFKKMEGLSPGKWRG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=130, Percent_Identity=33.0769230769231, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47673; Mature: 47673

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEKIKDKLKKVINIYSYATGIGCRIISTEDMKEVFQPPLSRPSFCKMVHSCSRCDDDC
CCCHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHH
KQSYIYGGLQAEKLGEPYIYFCPYGLVNWAVPLFGEKKMEYFFTGGPVLLHPVDDLLIED
HHHHHHCCCCHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCEEECCHHHHHHHH
ILNQNPLLGSSYRELREHLNKLIQVDTVRARYLSELLMELSKNVMLERGYRQNRKREYNS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INARIAEKIHELKQGKDDEGTLYPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQSGN
HHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
KLDIIKAKAIELMVVLARAAIEVGADLEVIFGLENTYFNKIDNIEDVNRLSEILVRVLDR
EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH
FIECIFSIKNVRKKDLMYKAMNYIRDNYAHKSISLNEVADEVGLSAAYFSKLFKEELGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC
YTEYLNKVRIEASKELLKQGCSLASIAQTVGFNDQSYFSKVFKKMEGLSPGKWRG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MINEKIKDKLKKVINIYSYATGIGCRIISTEDMKEVFQPPLSRPSFCKMVHSCSRCDDDC
CCCHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHH
KQSYIYGGLQAEKLGEPYIYFCPYGLVNWAVPLFGEKKMEYFFTGGPVLLHPVDDLLIED
HHHHHHCCCCHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCEEECCHHHHHHHH
ILNQNPLLGSSYRELREHLNKLIQVDTVRARYLSELLMELSKNVMLERGYRQNRKREYNS
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INARIAEKIHELKQGKDDEGTLYPIEKEQELIKKVKLGDKQGARAILNDILGFVYFQSGN
HHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
KLDIIKAKAIELMVVLARAAIEVGADLEVIFGLENTYFNKIDNIEDVNRLSEILVRVLDR
EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH
FIECIFSIKNVRKKDLMYKAMNYIRDNYAHKSISLNEVADEVGLSAAYFSKLFKEELGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC
YTEYLNKVRIEASKELLKQGCSLASIAQTVGFNDQSYFSKVFKKMEGLSPGKWRG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]