Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 220931576

GI number: 220931576

Start: 791249

End: 791761

Strand: Direct

Name: rimM

Synonym: Hore_07320

Alternate gene names: 220931576

Gene position: 791249-791761 (Clockwise)

Preceding gene: 220931575

Following gene: 220931577

Centisome position: 30.69

GC content: 36.06

Gene sequence:

>513_bases
GTGAACGATAAAATGATTACTATAGGTAAGGTCACAACCCATCAGGGTAATAAAGGGGAGGTAAGGGTCTTACCCCTTAC
TGATTATCCTGAAAGATTTGAATTACTGGAACAGGTATTTCTGGTCCGTGATAACCGGGTTATTGAAAAGAGAGTTGAAC
AAATTAGGTTTCACAAAAAATTTGTAATTATTAAATTTGAGGGTATTGATGATATTGGGGCCGCCCTTGCATATAAAGAT
TACTTCATAAAAATACCACGGGAAGAAACTCTGGATCTTCCTGAAGGACATTACTTTATCTTTGAATTACTGGGATTTGA
AGTTTATACAGATGAAGGTATTTTTCTGGGTAAAGTTGTTGATATTATTACTACCGGGGGAACCGATATCATTAAAGTAA
AAGGTGATAAAAAAGATTATATGGTTCCAGCTGCCCGGGAAATAGTAGTCAATATTAACCCGGATGAAGAGAAGATAATT
ATTAAGCCCATTCCAGGGTTACTGGATTTGTAG

Upstream 100 bases:

>100_bases
CCCGGGCTATCAGGACTGTTGTCAAGGCTGCTGCCACCAAGGAAGGTAAAAAAGTAATTGTCGATATTCAATAAACCAGA
GAATGAGATGGTGAGGCCCC

Downstream 100 bases:

>100_bases
GGGGGCCAGTCATGAATTTTGATATTTTAACTTTATTTCCAGAGATGTTTGACGGCCCTTTTAACAATAGTATTATTGGT
AAAGCCCGGGACAGGGGTTT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MNDKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFVIIKFEGIDDIGAALAYKD
YFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDIITTGGTDIIKVKGDKKDYMVPAAREIVVNINPDEEKII
IKPIPGLLDL

Sequences:

>Translated_170_residues
MNDKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFVIIKFEGIDDIGAALAYKD
YFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDIITTGGTDIIKVKGDKKDYMVPAAREIVVNINPDEEKII
IKPIPGLLDL
>Mature_170_residues
MNDKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFVIIKFEGIDDIGAALAYKD
YFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDIITTGGTDIIKVKGDKKDYMVPAAREIVVNINPDEEKII
IKPIPGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=134, Percent_Identity=32.089552238806, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_HALOH (B8CW20)

Other databases:

- EMBL:   CP001098
- RefSeq:   YP_002508484.1
- GeneID:   7312967
- GenomeReviews:   CP001098_GR
- KEGG:   hor:Hore_07320
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   CLSK2806281
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19551; Mature: 19551

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKK
CCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEE
FVIIKFEGIDDIGAALAYKDYFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVV
EEEEEECCCCCHHHHHEEEEEEEECCCHHCCCCCCCCEEEEEEECEEEECCCCEEEHEEE
DIITTGGTDIIKVKGDKKDYMVPAAREIVVNINPDEEKIIIKPIPGLLDL
EEEECCCCEEEEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCHHCCC
>Mature Secondary Structure
MNDKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKK
CCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEE
FVIIKFEGIDDIGAALAYKDYFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVV
EEEEEECCCCCHHHHHEEEEEEEECCCHHCCCCCCCCEEEEEEECEEEECCCCEEEHEEE
DIITTGGTDIIKVKGDKKDYMVPAAREIVVNINPDEEKIIIKPIPGLLDL
EEEECCCCEEEEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA