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The map label for this gene is spoVAF [H]

Identifier: 220931552

GI number: 220931552

Start: 764650

End: 766155

Strand: Direct

Name: spoVAF [H]

Synonym: Hore_07080

Alternate gene names: 220931552

Gene position: 764650-766155 (Clockwise)

Preceding gene: 220931551

Following gene: 220931553

Centisome position: 29.66

GC content: 40.77

Gene sequence:

>1506_bases
ATGGAACAGGGAAGTGATGAAGTGGATAAACCGCTTAGCAAAAAGCTGGAAGATAATTTAAAAACACTTAAGAATGAACT
TGGAGCCGATGAGAGTTTTGATGTCCTGACCCGGGAATTTGAAATAGGGGATAAGGAAGCTGCTTTAATTTTTATTGATG
GTTTTATAAAAGATGATCTTATTTTACCCATTCTCTATATGATGGAGACCAGTCGTGAGGATATATCAGTAGATGTCATA
AAAAAAATATTAAAAAGACGCCTTCCCTACTATGAGGTTAGTACGGTAAAGACCCTTGATAAGATTGTCCAGGAAGTACT
GGCCGGGCCCCAGGTATTATTAATTGACGGGGTCGATGAAGCTATAGTTATTGACGGGAGAACCTGGTTAAGCCGTTCCC
CTGACGAACCTGAACTCGAAAAGGCAACCAGGGGTCCAGCTGATGGATTTGTAGAGACATTGTTATTTAATGTTAATGCT
GTTAGAAGGAGAATCAGGGACGCTAATTTCAGAGCTGAAGTACTCCAGGTAGGGAAAAGATCAAAAAATGATGTAGCCCT
ACTTTATATAAAAGATATTATAAATAAAGACCTGGTTGACAGGGTTAGAGAAAAGCTGAAAAACGTTGATATTGATGGAT
TACCACTGGGGGATAAATCAATTGAAGAAATAATAACGGGAGGAACCATAAATCCTCTACCCCTGGTAAGGTATACTGAA
AGGCCGGATAATGTTGCTGCCCATCTCCTGGAAGGACATCTTGCTATTATTGTGGATAATTCACCGACTGCCCTGGTTTT
ACCGGCCCCTTTCTTATCCCATATTCAAACCCTGGAAGTGTACAGGAAAGGACCGGTAATCGGGACCTATCTGTCCCTTA
TAAGAACAATGGCTATTTTTATATCAGTTTTTTTGCCGGCTGTATGGTTACTTATGGCTACCAATAAGGAAATTTTGCCT
GACTTTCTTGAATTTATCGGGGTCAGGCAGGAGAGTACAATCGGCCTTGGATTGCAGTTTATTCTGGCGAGTCTGGGAAT
TGATTTAATCAGGATTGCATCGATCCAGACACCGAGTACTTTAGCAACATCACTGAGTTTAATTGGTGCCCTGCTTTTAG
GAGACTTTGCTGTCAAGGTTGGTTTATTTTCCCCGGAGGTTATCCTGTATATGGCCATATCGGCGATCAGTAATTTTGCC
ATTCCGGGGTATGAACTGGCTCTAGTCCTGAAACTCTGCAGGTTTGTATTTTTGCTGGCAGCAATTTTTGGAGGGATCTG
GGGTTTTATTATCAGCCTTGTTGTAGTTTTACTATGGATGGTATTTACCAAAAGCTTCGGTGTTTATTATATGTGGCCCA
TCATTCCATTTGATTATCAGGCTTTGAAGTCATATCTTGTCCGTCAGACAGTTATGGATTTATCCCATATTAGACCTGAA
GCCTTAAAGACCCAGGACAAAGATAGAACTGTAAAAGAAGATGATAAGGAAAGAAACAGGGAGTGA

Upstream 100 bases:

>100_bases
GCCTTCAATTATTAACATAAGGTCAGGCTAATCCATTGAGCCTGTTCAAGTCACAGGATCAACGACATCCGTAATTTTCA
AATTTCCTCAACTAAAAAGG

Downstream 100 bases:

>100_bases
TGAAAAATGGGAAGTAAGATTGGTGTTCCCCGGGCTCTTTTATATCATTATTATTACCCGGCCTGGGAAGAGTTTTTTAA
TAGACTGGGTTTTGAAATTG

Product: GerA spore germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MEQGSDEVDKPLSKKLEDNLKTLKNELGADESFDVLTREFEIGDKEAALIFIDGFIKDDLILPILYMMETSREDISVDVI
KKILKRRLPYYEVSTVKTLDKIVQEVLAGPQVLLIDGVDEAIVIDGRTWLSRSPDEPELEKATRGPADGFVETLLFNVNA
VRRRIRDANFRAEVLQVGKRSKNDVALLYIKDIINKDLVDRVREKLKNVDIDGLPLGDKSIEEIITGGTINPLPLVRYTE
RPDNVAAHLLEGHLAIIVDNSPTALVLPAPFLSHIQTLEVYRKGPVIGTYLSLIRTMAIFISVFLPAVWLLMATNKEILP
DFLEFIGVRQESTIGLGLQFILASLGIDLIRIASIQTPSTLATSLSLIGALLLGDFAVKVGLFSPEVILYMAISAISNFA
IPGYELALVLKLCRFVFLLAAIFGGIWGFIISLVVVLLWMVFTKSFGVYYMWPIIPFDYQALKSYLVRQTVMDLSHIRPE
ALKTQDKDRTVKEDDKERNRE

Sequences:

>Translated_501_residues
MEQGSDEVDKPLSKKLEDNLKTLKNELGADESFDVLTREFEIGDKEAALIFIDGFIKDDLILPILYMMETSREDISVDVI
KKILKRRLPYYEVSTVKTLDKIVQEVLAGPQVLLIDGVDEAIVIDGRTWLSRSPDEPELEKATRGPADGFVETLLFNVNA
VRRRIRDANFRAEVLQVGKRSKNDVALLYIKDIINKDLVDRVREKLKNVDIDGLPLGDKSIEEIITGGTINPLPLVRYTE
RPDNVAAHLLEGHLAIIVDNSPTALVLPAPFLSHIQTLEVYRKGPVIGTYLSLIRTMAIFISVFLPAVWLLMATNKEILP
DFLEFIGVRQESTIGLGLQFILASLGIDLIRIASIQTPSTLATSLSLIGALLLGDFAVKVGLFSPEVILYMAISAISNFA
IPGYELALVLKLCRFVFLLAAIFGGIWGFIISLVVVLLWMVFTKSFGVYYMWPIIPFDYQALKSYLVRQTVMDLSHIRPE
ALKTQDKDRTVKEDDKERNRE
>Mature_501_residues
MEQGSDEVDKPLSKKLEDNLKTLKNELGADESFDVLTREFEIGDKEAALIFIDGFIKDDLILPILYMMETSREDISVDVI
KKILKRRLPYYEVSTVKTLDKIVQEVLAGPQVLLIDGVDEAIVIDGRTWLSRSPDEPELEKATRGPADGFVETLLFNVNA
VRRRIRDANFRAEVLQVGKRSKNDVALLYIKDIINKDLVDRVREKLKNVDIDGLPLGDKSIEEIITGGTINPLPLVRYTE
RPDNVAAHLLEGHLAIIVDNSPTALVLPAPFLSHIQTLEVYRKGPVIGTYLSLIRTMAIFISVFLPAVWLLMATNKEILP
DFLEFIGVRQESTIGLGLQFILASLGIDLIRIASIQTPSTLATSLSLIGALLLGDFAVKVGLFSPEVILYMAISAISNFA
IPGYELALVLKLCRFVFLLAAIFGGIWGFIISLVVVLLWMVFTKSFGVYYMWPIIPFDYQALKSYLVRQTVMDLSHIRPE
ALKTQDKDRTVKEDDKERNRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56219; Mature: 56219

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGSDEVDKPLSKKLEDNLKTLKNELGADESFDVLTREFEIGDKEAALIFIDGFIKDDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEECHHCCHH
ILPILYMMETSREDISVDVIKKILKRRLPYYEVSTVKTLDKIVQEVLAGPQVLLIDGVDE
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCC
AIVIDGRTWLSRSPDEPELEKATRGPADGFVETLLFNVNAVRRRIRDANFRAEVLQVGKR
EEEECCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
SKNDVALLYIKDIINKDLVDRVREKLKNVDIDGLPLGDKSIEEIITGGTINPLPLVRYTE
CCCCEEEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECC
RPDNVAAHLLEGHLAIIVDNSPTALVLPAPFLSHIQTLEVYRKGPVIGTYLSLIRTMAIF
CCHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ISVFLPAVWLLMATNKEILPDFLEFIGVRQESTIGLGLQFILASLGIDLIRIASIQTPST
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHH
LATSLSLIGALLLGDFAVKVGLFSPEVILYMAISAISNFAIPGYELALVLKLCRFVFLLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AIFGGIWGFIISLVVVLLWMVFTKSFGVYYMWPIIPFDYQALKSYLVRQTVMDLSHIRPE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHH
ALKTQDKDRTVKEDDKERNRE
HHCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MEQGSDEVDKPLSKKLEDNLKTLKNELGADESFDVLTREFEIGDKEAALIFIDGFIKDDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEECHHCCHH
ILPILYMMETSREDISVDVIKKILKRRLPYYEVSTVKTLDKIVQEVLAGPQVLLIDGVDE
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCC
AIVIDGRTWLSRSPDEPELEKATRGPADGFVETLLFNVNAVRRRIRDANFRAEVLQVGKR
EEEECCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
SKNDVALLYIKDIINKDLVDRVREKLKNVDIDGLPLGDKSIEEIITGGTINPLPLVRYTE
CCCCEEEEEHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECC
RPDNVAAHLLEGHLAIIVDNSPTALVLPAPFLSHIQTLEVYRKGPVIGTYLSLIRTMAIF
CCHHHHHHHHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ISVFLPAVWLLMATNKEILPDFLEFIGVRQESTIGLGLQFILASLGIDLIRIASIQTPST
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHH
LATSLSLIGALLLGDFAVKVGLFSPEVILYMAISAISNFAIPGYELALVLKLCRFVFLLA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AIFGGIWGFIISLVVVLLWMVFTKSFGVYYMWPIIPFDYQALKSYLVRQTVMDLSHIRPE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHH
ALKTQDKDRTVKEDDKERNRE
HHCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 7934829; 1368705; 3926949 [H]