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The map label for this gene is ddpA [H]

Identifier: 220931335

GI number: 220931335

Start: 531514

End: 533319

Strand: Direct

Name: ddpA [H]

Synonym: Hore_04900

Alternate gene names: 220931335

Gene position: 531514-533319 (Clockwise)

Preceding gene: 220931334

Following gene: 220931336

Centisome position: 20.62

GC content: 40.14

Gene sequence:

>1806_bases
ATGAGTAAGAGAGTAGGTGTTTTATTACTTACACTTCTGTTAGTTTTTTCTGTTTTTGGTGTTGTTGATGCTGTAAATAA
TCCAGATACTTATGTCCATGTAACTATCGGTGACCAGTCAACTCTTGACCCACATTATTCATATGATACCGGTAGTAGTG
AATTAATATATCAGGTATACGAAACTTTAATCGACTATAAAGGTTCCAGTGTAACTGAATTTAAACCTTTACTGTCTACC
AAAGTGCCTTCTGTTGAAAATGGTTTAATTAAAGATGGTGGTAAAACCTACATCTTCCCAATTCGTCAGGGTGTTAAATT
TAGCAATGGTAACCCCTTAACACCTGAAGATGTTGAGTACAGTTTTGAAAGGGCTTTAATTTTAGACCGTGCTTACGGTC
CTATCTGGATGTTCTATGAACCATTATTTGGTCTTGGTTCCCTTTCTGATCTGACCAAGAAGGTTGTTGGTGTAGAAGAT
CCTAAAAAATTAACTCCTGAACAGTCAGCTAAAGTATATGCTGAAATTGATAAGAAAATCGAAGTCGATGGTAATAACGT
TGTTTTCCATCTGGAAAATCCCTATCCTCCATTCTTAAATATCCTGGCCAAAGGTGCTTCCTGGGCCAGTATACTTGATA
AAGAATGGTCTATTGAGCAGGGAGCATGGGATGGAAGTCCTGAAACCATTGCTAAATACCATGACCCTGTAAAAGAAGAT
GACCCACTCTTTAATAAGATGATGGGTACTGGTCCCTTTATTCTCGTTGAATGGGTGAATGGTGACCATGTTATCTTCAA
ACGTAATGATAATTACTGGCGTGAGCCTGCTAACTTCAAGACTGTAATTATCAAGAACGTTGATGAGCCTACCACCCGTA
TCTTAATGCTGAAACGTGGTGACGCTGATTCTATCTCCCTAGATTACCAGTACTTCAACCAGATCGAAGGTGTTGAAGGA
ATTAAGATTACCAGAGGTATTCCAGTTCTTCAGAACATGACCATGTTATTTAACTGGGATATCAATTCCAAGGGTAACGA
ATATATCGGAAGCGGTAAGCTCGATGGTAATGGTATACCTCCTGATTTCTTCACAGATGTCCATGTAAGAAGAGCTTTCA
GCTACTGCTTCAATTATGAAGCATTCATTGAACAGGTAAGGGACGGCCAGTCCATGAAATTACGTGGTCCAATTGTTAGC
CCCTTACTCGGTTATGACGAAAATTCACCTGTTTACAAACTTGACCTTGAAAAGGCTGAAGAAGAATTTAAGAAAGCCTG
GGATGGTAAGGTCTGGGAAAAAGGATTTGAACTTACCATTACCTATAATGCTGGTAACATGGCCCGTAAGACAGCTGCAG
ATATATTCAAGACCTATATAGAACAGATTAATCCCAAGTTTAAGGTTAATACCCAGGTTGTTCAGTGGTCAACATTCCTG
GATCAGTCACACAGGGGTCTCCTGCCATTACAGATCGGTGGCTGGTTAGCTGACTTCCCTGATCCCCATAACTTTGTACA
GCCCTTTATCCACTCACAAGGTTATTATGCCGGTAAACGTGGTGAAAATTACCAGAAATGGGCTGTTGAAGTTGGAATCG
ATGACCTCATTGAAAAGGGTATAACTACTCAGGATAAAGAAGAACGTGAAAAGATCTATAAGAAGTTACAGCAGATGTCC
CACGACTATGCTATCGATGTCTGGATTGACCAGCCATTAAGTGCCAGGATTGAAAGAAGCTGGGTTAAAGGCTGGTATCC
TAACTCCATGCGTCCCGGACAGGACTTCTATATCCTGGATAAATAA

Upstream 100 bases:

>100_bases
TTTGGATTTACCTGAAAGGGGGTGAATTGGGGAGTAGTTAGTAGGTAAAGTAGGTATTGGTCTGCTTTGATTAAAATAAT
AAAGAGGAGGTTTTCATTTA

Downstream 100 bases:

>100_bases
TATCCTTTTATCGAGTTTGATTTAGAAATGTAAAAGATATATCTACAGTAATTAACGCCAGGGGGGTAACCCCCTGGCAA
TTCTATGAAAATAACTTTTT

Product: family 5 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MSKRVGVLLLTLLLVFSVFGVVDAVNNPDTYVHVTIGDQSTLDPHYSYDTGSSELIYQVYETLIDYKGSSVTEFKPLLST
KVPSVENGLIKDGGKTYIFPIRQGVKFSNGNPLTPEDVEYSFERALILDRAYGPIWMFYEPLFGLGSLSDLTKKVVGVED
PKKLTPEQSAKVYAEIDKKIEVDGNNVVFHLENPYPPFLNILAKGASWASILDKEWSIEQGAWDGSPETIAKYHDPVKED
DPLFNKMMGTGPFILVEWVNGDHVIFKRNDNYWREPANFKTVIIKNVDEPTTRILMLKRGDADSISLDYQYFNQIEGVEG
IKITRGIPVLQNMTMLFNWDINSKGNEYIGSGKLDGNGIPPDFFTDVHVRRAFSYCFNYEAFIEQVRDGQSMKLRGPIVS
PLLGYDENSPVYKLDLEKAEEEFKKAWDGKVWEKGFELTITYNAGNMARKTAADIFKTYIEQINPKFKVNTQVVQWSTFL
DQSHRGLLPLQIGGWLADFPDPHNFVQPFIHSQGYYAGKRGENYQKWAVEVGIDDLIEKGITTQDKEEREKIYKKLQQMS
HDYAIDVWIDQPLSARIERSWVKGWYPNSMRPGQDFYILDK

Sequences:

>Translated_601_residues
MSKRVGVLLLTLLLVFSVFGVVDAVNNPDTYVHVTIGDQSTLDPHYSYDTGSSELIYQVYETLIDYKGSSVTEFKPLLST
KVPSVENGLIKDGGKTYIFPIRQGVKFSNGNPLTPEDVEYSFERALILDRAYGPIWMFYEPLFGLGSLSDLTKKVVGVED
PKKLTPEQSAKVYAEIDKKIEVDGNNVVFHLENPYPPFLNILAKGASWASILDKEWSIEQGAWDGSPETIAKYHDPVKED
DPLFNKMMGTGPFILVEWVNGDHVIFKRNDNYWREPANFKTVIIKNVDEPTTRILMLKRGDADSISLDYQYFNQIEGVEG
IKITRGIPVLQNMTMLFNWDINSKGNEYIGSGKLDGNGIPPDFFTDVHVRRAFSYCFNYEAFIEQVRDGQSMKLRGPIVS
PLLGYDENSPVYKLDLEKAEEEFKKAWDGKVWEKGFELTITYNAGNMARKTAADIFKTYIEQINPKFKVNTQVVQWSTFL
DQSHRGLLPLQIGGWLADFPDPHNFVQPFIHSQGYYAGKRGENYQKWAVEVGIDDLIEKGITTQDKEEREKIYKKLQQMS
HDYAIDVWIDQPLSARIERSWVKGWYPNSMRPGQDFYILDK
>Mature_600_residues
SKRVGVLLLTLLLVFSVFGVVDAVNNPDTYVHVTIGDQSTLDPHYSYDTGSSELIYQVYETLIDYKGSSVTEFKPLLSTK
VPSVENGLIKDGGKTYIFPIRQGVKFSNGNPLTPEDVEYSFERALILDRAYGPIWMFYEPLFGLGSLSDLTKKVVGVEDP
KKLTPEQSAKVYAEIDKKIEVDGNNVVFHLENPYPPFLNILAKGASWASILDKEWSIEQGAWDGSPETIAKYHDPVKEDD
PLFNKMMGTGPFILVEWVNGDHVIFKRNDNYWREPANFKTVIIKNVDEPTTRILMLKRGDADSISLDYQYFNQIEGVEGI
KITRGIPVLQNMTMLFNWDINSKGNEYIGSGKLDGNGIPPDFFTDVHVRRAFSYCFNYEAFIEQVRDGQSMKLRGPIVSP
LLGYDENSPVYKLDLEKAEEEFKKAWDGKVWEKGFELTITYNAGNMARKTAADIFKTYIEQINPKFKVNTQVVQWSTFLD
QSHRGLLPLQIGGWLADFPDPHNFVQPFIHSQGYYAGKRGENYQKWAVEVGIDDLIEKGITTQDKEEREKIYKKLQQMSH
DYAIDVWIDQPLSARIERSWVKGWYPNSMRPGQDFYILDK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=592, Percent_Identity=26.0135135135135, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1789966, Length=606, Percent_Identity=26.8976897689769, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787495, Length=566, Percent_Identity=22.9681978798587, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789397, Length=572, Percent_Identity=22.027972027972, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 68700; Mature: 68568

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRVGVLLLTLLLVFSVFGVVDAVNNPDTYVHVTIGDQSTLDPHYSYDTGSSELIYQVY
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
ETLIDYKGSSVTEFKPLLSTKVPSVENGLIKDGGKTYIFPIRQGVKFSNGNPLTPEDVEY
HHHHHCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCEECCCCCCCCHHHHH
SFERALILDRAYGPIWMFYEPLFGLGSLSDLTKKVVGVEDPKKLTPEQSAKVYAEIDKKI
HHHHEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEECCEE
EVDGNNVVFHLENPYPPFLNILAKGASWASILDKEWSIEQGAWDGSPETIAKYHDPVKED
EECCCEEEEEECCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC
DPLFNKMMGTGPFILVEWVNGDHVIFKRNDNYWREPANFKTVIIKNVDEPTTRILMLKRG
CHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECC
DADSISLDYQYFNQIEGVEGIKITRGIPVLQNMTMLFNWDINSKGNEYIGSGKLDGNGIP
CCCCEEECHHHHHHCCCCCCEEEECCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
PDFFTDVHVRRAFSYCFNYEAFIEQVRDGQSMKLRGPIVSPLLGYDENSPVYKLDLEKAE
CHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCEEEEEHHHHH
EEFKKAWDGKVWEKGFELTITYNAGNMARKTAADIFKTYIEQINPKFKVNTQVVQWSTFL
HHHHHHHCCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHH
DQSHRGLLPLQIGGWLADFPDPHNFVQPFIHSQGYYAGKRGENYQKWAVEVGIDDLIEKG
CCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHCC
ITTQDKEEREKIYKKLQQMSHDYAIDVWIDQPLSARIERSWVKGWYPNSMRPGQDFYILD
CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEC
K
C
>Mature Secondary Structure 
SKRVGVLLLTLLLVFSVFGVVDAVNNPDTYVHVTIGDQSTLDPHYSYDTGSSELIYQVY
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
ETLIDYKGSSVTEFKPLLSTKVPSVENGLIKDGGKTYIFPIRQGVKFSNGNPLTPEDVEY
HHHHHCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEECCCCEECCCCCCCCHHHHH
SFERALILDRAYGPIWMFYEPLFGLGSLSDLTKKVVGVEDPKKLTPEQSAKVYAEIDKKI
HHHHEEEEECCCCCEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHEEECCEE
EVDGNNVVFHLENPYPPFLNILAKGASWASILDKEWSIEQGAWDGSPETIAKYHDPVKED
EECCCEEEEEECCCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC
DPLFNKMMGTGPFILVEWVNGDHVIFKRNDNYWREPANFKTVIIKNVDEPTTRILMLKRG
CHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECC
DADSISLDYQYFNQIEGVEGIKITRGIPVLQNMTMLFNWDINSKGNEYIGSGKLDGNGIP
CCCCEEECHHHHHHCCCCCCEEEECCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
PDFFTDVHVRRAFSYCFNYEAFIEQVRDGQSMKLRGPIVSPLLGYDENSPVYKLDLEKAE
CHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCEEEEEHHHHH
EEFKKAWDGKVWEKGFELTITYNAGNMARKTAADIFKTYIEQINPKFKVNTQVVQWSTFL
HHHHHHHCCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHH
DQSHRGLLPLQIGGWLADFPDPHNFVQPFIHSQGYYAGKRGENYQKWAVEVGIDDLIEKG
CCCCCCEEEEEECCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHCC
ITTQDKEEREKIYKKLQQMSHDYAIDVWIDQPLSARIERSWVKGWYPNSMRPGQDFYILD
CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]