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The map label for this gene is yvoA [H]

Identifier: 220931252

GI number: 220931252

Start: 420277

End: 420981

Strand: Direct

Name: yvoA [H]

Synonym: Hore_04070

Alternate gene names: 220931252

Gene position: 420277-420981 (Clockwise)

Preceding gene: 220931251

Following gene: 220931253

Centisome position: 16.3

GC content: 35.04

Gene sequence:

>705_bases
ATGGGTAAACCGGTTTTACCAACCTATAAAACGATAGCAGCTGAAATTACCAATAGGATACATGAAGGCGAATATAAGTC
GGGTAGTTACCTTCCTTCAGAAAATCAGTTAGCCAGGGAGTTTGAAGTTACCAGGACTACAATTAGAAAGGCCTTAAATA
TTTTAAAAGAAAGAGGGACCATTGAAAGCCACCAGGGTAAAGGTTATCGGGTTAAGTTACTTCACTGGGAACAGAGCCTG
TTAACTTTTTATAGTTTTGGACGTGATATTGCCTGGAAAGTGCAGAACCCGGAAACAAGGTTGCTTTCCTATAATAAAAT
CAGGGGTCTAAAAAATATTAATGAGTTCATTAATACCGAATTATGGGAGATTACCCGGTTAAGGTTTATGAATGAAATCC
CATTAATTTTAGAGACTTCATATATTCCTGTAAAGGTTATGCCAGAATTTAAAGAAGAAGACCTTAAACAGAATTCACTA
TATAATTTATTAAAAGAAAATGGTGTTCATATTGTAAAAGCTAAAGAATATCTGGAACCAGTATTACCATCACTGGAAGA
CCAGAAATTATTGAATATCAAACAGAATACCCCTCTATTTCAAACCCTTAGATATACCTATGATTCTAATGAGAAACTAC
TTGAAGTAAGGGAAAGTTTGATCAGGGGTGACCACTTCCGGTTTTCTGTAGAAATGACTTTATAA

Upstream 100 bases:

>100_bases
CTCAAAACTCATGATTACCATTAAAAAGTAAATATTTTAAAGGATAATAAATCATAATTATTGTCTTAGTAATGATCTAA
TAGGGGAGGAATTTTGTTAG

Downstream 100 bases:

>100_bases
GAGGCAAATAACCTATGAAAAAATCTTTGAAAAACCTGGTAAAGCTATTTTTCGTTTTTTTAAAAATAGGTTTATTTACC
TTCGGGGGTGGTTTTGCCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MGKPVLPTYKTIAAEITNRIHEGEYKSGSYLPSENQLAREFEVTRTTIRKALNILKERGTIESHQGKGYRVKLLHWEQSL
LTFYSFGRDIAWKVQNPETRLLSYNKIRGLKNINEFINTELWEITRLRFMNEIPLILETSYIPVKVMPEFKEEDLKQNSL
YNLLKENGVHIVKAKEYLEPVLPSLEDQKLLNIKQNTPLFQTLRYTYDSNEKLLEVRESLIRGDHFRFSVEMTL

Sequences:

>Translated_234_residues
MGKPVLPTYKTIAAEITNRIHEGEYKSGSYLPSENQLAREFEVTRTTIRKALNILKERGTIESHQGKGYRVKLLHWEQSL
LTFYSFGRDIAWKVQNPETRLLSYNKIRGLKNINEFINTELWEITRLRFMNEIPLILETSYIPVKVMPEFKEEDLKQNSL
YNLLKENGVHIVKAKEYLEPVLPSLEDQKLLNIKQNTPLFQTLRYTYDSNEKLLEVRESLIRGDHFRFSVEMTL
>Mature_233_residues
GKPVLPTYKTIAAEITNRIHEGEYKSGSYLPSENQLAREFEVTRTTIRKALNILKERGTIESHQGKGYRVKLLHWEQSLL
TFYSFGRDIAWKVQNPETRLLSYNKIRGLKNINEFINTELWEITRLRFMNEIPLILETSYIPVKVMPEFKEEDLKQNSLY
NLLKENGVHIVKAKEYLEPVLPSLEDQKLLNIKQNTPLFQTLRYTYDSNEKLLEVRESLIRGDHFRFSVEMTL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=27.0386266094421, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=25.5506607929515, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=21.3973799126638, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790540, Length=234, Percent_Identity=27.3504273504274, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27594; Mature: 27463

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKPVLPTYKTIAAEITNRIHEGEYKSGSYLPSENQLAREFEVTRTTIRKALNILKERGT
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
IESHQGKGYRVKLLHWEQSLLTFYSFGRDIAWKVQNPETRLLSYNKIRGLKNINEFINTE
CCCCCCCCEEEEEEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCH
LWEITRLRFMNEIPLILETSYIPVKVMPEFKEEDLKQNSLYNLLKENGVHIVKAKEYLEP
HHHHHHHHHHCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHH
VLPSLEDQKLLNIKQNTPLFQTLRYTYDSNEKLLEVRESLIRGDHFRFSVEMTL
HCCCCCCCHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
GKPVLPTYKTIAAEITNRIHEGEYKSGSYLPSENQLAREFEVTRTTIRKALNILKERGT
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
IESHQGKGYRVKLLHWEQSLLTFYSFGRDIAWKVQNPETRLLSYNKIRGLKNINEFINTE
CCCCCCCCEEEEEEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCH
LWEITRLRFMNEIPLILETSYIPVKVMPEFKEEDLKQNSLYNLLKENGVHIVKAKEYLEP
HHHHHHHHHHCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHH
VLPSLEDQKLLNIKQNTPLFQTLRYTYDSNEKLLEVRESLIRGDHFRFSVEMTL
HCCCCCCCHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]