| Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011891 |
| Length | 5,029,329 |
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The map label for this gene is udk [H]
Identifier: 220918948
GI number: 220918948
Start: 4295839
End: 4297986
Strand: Direct
Name: udk [H]
Synonym: A2cp1_3863
Alternate gene names: 220918948
Gene position: 4295839-4297986 (Clockwise)
Preceding gene: 220918947
Following gene: 220918949
Centisome position: 85.42
GC content: 75.37
Gene sequence:
>2148_bases ATGGCCATCCGGCCACAGGACCTGTCCCGCCCGCCCGGCCCCGCGCTGGAGCGCGGCCCCCTGCTCGCCCGCATGGACGC GGCGGGCCGCGAGCGGCTGCTGGCCCGGGCCGAGCGGCTCACGTTCGCCGCGCGCACGCGCGTGCACGGGGACGCCGACG CGGGGCGCCACCTGTACCTGATCCTGGAGGGCACCGCGACGCTCCGGCGCGAGCAGCTCGCGCTGCGCCGGCTCGGGCCG GGCGACCACTTCGGCGAGCTGGCGGGGCTGGGCGGGCGGCACCGGGGCGAGACGGTGATCTCCGACGGCCCGCTCACCGT GGCGCGCCTGTCCCCGGCCGCGCTCGCCGACCTGGAGCGCGAGGCGCCCGCGGTCGCGACCCAGCTCGCCATCGGCGTGG CGGCGGCGCTCGCCGAGGACCTCGAGCGCGTGAGCGGCGACATGGACCTGCTGCTGCGCGGCCGCTCGCTGCCGCGCGCG CAGGAGGTCACGGTCCAGGTGATGGGCGAGGCGCGCCGGATCCGCACCGGCACGCGCGTGCGCGACCTGCTGCCCGAGGC CATCGAGGGGGACCTGGTGGTGGCGGGGCTGCTCGGGCAGAAGCCGGTGTCGCTCGCGACGCCGGTGTTCACCGACACCA CGGTGGCGCCGCTCACCGTCTCGCACTGGGAGGGGCGCCAGGTCTACGCCCACTCGCTCGGGCTGGTGCTGCTGGAGGCC GCGCACCAGGTGGCGCCGGCGCTGCGGGTGCGCATGGGCCCGTCGCTCGGGGTGCGCCAGCTCGTGGTGGTGGAGGGCGC GGGCGGGGAGGATCGCGCCGCGCTGGCGGCGCGCCTCGCGGCCGGGATGGAGCGGATCGTCGCCGCCGACGCGCCGTTCC GGAGCGAGTACTGGTCCACCGACGAGGCGCAGGGGTGGTTCCTGGAGCGCGGCTGGAGCGACGCCGCCCGGCTGCTGCGC GTCCGCCGGCAGGCCACGGTCCGCCTGGTCTCCTGCGGCGACGTGTACGCGCTGTCCATGGGGCCGCTGCTGCCGTCCAC CGGGGCGCTGCACGGCTGGACGCTGGAGCCGGCGGACGGCGACGACGGCCTGCTGCTCGACCTCGGCCGGCTCGACCCGC GCAACGGCCACGGCGCGACCCCGCGCCCGCGGCCGCGCCGGGCCGGCGACATGGTCCGCGACCACCGGGCCTGGCTCGAC GCCATGGACGTCACCAGCGTGGGCGCGTTCAACGACCTGTGCATCTCCGGCCAGGTGACGCAGCTCATCCGCGTGGCGGA GGGCTTCCACGAGAAGCGGATCGGCCAGATCGCCGACGCCATCGCGGCGGGGCGCGAGCGGATCCGGATCATCTCCATCG CCGGCCCGTCGTCGTCGGGCAAGACCACGTTCATCAAGCGGCTCACCGTCCAGCTGCAGATCGACGGCGTGAACCCGGTG GGCATCTCGCTCGACGACTACTACGTGGACCGCGAGAAGACCCCGCGCGACGCCCGCGGCGAGTGGGACTTCGAGGCGCT GGAGGCGCTCGACCTGCCGCTCCTGCAGGACCACGTCCGCCGGCTGCTCGCCGGCGAGGCGGTGCGCACGGCGCACTACC ACTTCCTCACCGGCCGGAGCCACCCGGAGGGCGGGCCGGTGATCCAGCTCCGCCCGGGCGACGTGCTCATGCTGGAGGGG ATCCACGGCCTGAACCCGCGGCTGCTCGGCGCCATCCCGCGCGCGGGCGAGTTGTTCCGCGTGTTCGTGCACCCCGCCAC CACGCTCCCGTTCGACCGGCTCACGCGCGTGTCGGCTACCGACCTCCGCCTGCTGCGCCGGATCATCCGCGACCGCCACC ACCGCGGCTACTCCGCGGCGGACAACATCGTGCGCTGGCCGTCGGTGCAGGCGGGGGAGCGCGAGCACATCTTCCCGTAC CAGGACGAGGCCGAGGCGGTGTTCGACACCTCGCTCATCTACGAGCCCGCCGTCCTGAAGGTCTACGCGGAGCGCTACCT GCTGGAGGTCCCGCCGGACCACCCGGCCTTCCCGACCGCGCACCGGCTCCGCTACCTGGTGGACCGCTTCGTCTCCATCT ACCCGGACCACGTCCCGCCGACCTCGCTCATCCGCGAGTTCATCGGCGGGAGCGGGTTCGAGTACTGA
Upstream 100 bases:
>100_bases GCCCGGCCGCCGGGGGCGCGCACGCAGGGACCGGGTGCGCTTTCGCGCGCACCCTGGACGCGCTAGCATCGTAGGCCCCC GCCGAGGAGGCGCCCACCGG
Downstream 100 bases:
>100_bases GAGGTCTCCCGTGCCGCCGACTCCGGATCGCCGACGGCTCCTCGAACGGCTGGGCGCGCTGCTGGACGACGCGGCGCGGA GGGGATCGCTCCCCGAGGCC
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Cytidine monophosphokinase; Uridine monophosphokinase [H]
Number of amino acids: Translated: 715; Mature: 714
Protein sequence:
>715_residues MAIRPQDLSRPPGPALERGPLLARMDAAGRERLLARAERLTFAARTRVHGDADAGRHLYLILEGTATLRREQLALRRLGP GDHFGELAGLGGRHRGETVISDGPLTVARLSPAALADLEREAPAVATQLAIGVAAALAEDLERVSGDMDLLLRGRSLPRA QEVTVQVMGEARRIRTGTRVRDLLPEAIEGDLVVAGLLGQKPVSLATPVFTDTTVAPLTVSHWEGRQVYAHSLGLVLLEA AHQVAPALRVRMGPSLGVRQLVVVEGAGGEDRAALAARLAAGMERIVAADAPFRSEYWSTDEAQGWFLERGWSDAARLLR VRRQATVRLVSCGDVYALSMGPLLPSTGALHGWTLEPADGDDGLLLDLGRLDPRNGHGATPRPRPRRAGDMVRDHRAWLD AMDVTSVGAFNDLCISGQVTQLIRVAEGFHEKRIGQIADAIAAGRERIRIISIAGPSSSGKTTFIKRLTVQLQIDGVNPV GISLDDYYVDREKTPRDARGEWDFEALEALDLPLLQDHVRRLLAGEAVRTAHYHFLTGRSHPEGGPVIQLRPGDVLMLEG IHGLNPRLLGAIPRAGELFRVFVHPATTLPFDRLTRVSATDLRLLRRIIRDRHHRGYSAADNIVRWPSVQAGEREHIFPY QDEAEAVFDTSLIYEPAVLKVYAERYLLEVPPDHPAFPTAHRLRYLVDRFVSIYPDHVPPTSLIREFIGGSGFEY
Sequences:
>Translated_715_residues MAIRPQDLSRPPGPALERGPLLARMDAAGRERLLARAERLTFAARTRVHGDADAGRHLYLILEGTATLRREQLALRRLGP GDHFGELAGLGGRHRGETVISDGPLTVARLSPAALADLEREAPAVATQLAIGVAAALAEDLERVSGDMDLLLRGRSLPRA QEVTVQVMGEARRIRTGTRVRDLLPEAIEGDLVVAGLLGQKPVSLATPVFTDTTVAPLTVSHWEGRQVYAHSLGLVLLEA AHQVAPALRVRMGPSLGVRQLVVVEGAGGEDRAALAARLAAGMERIVAADAPFRSEYWSTDEAQGWFLERGWSDAARLLR VRRQATVRLVSCGDVYALSMGPLLPSTGALHGWTLEPADGDDGLLLDLGRLDPRNGHGATPRPRPRRAGDMVRDHRAWLD AMDVTSVGAFNDLCISGQVTQLIRVAEGFHEKRIGQIADAIAAGRERIRIISIAGPSSSGKTTFIKRLTVQLQIDGVNPV GISLDDYYVDREKTPRDARGEWDFEALEALDLPLLQDHVRRLLAGEAVRTAHYHFLTGRSHPEGGPVIQLRPGDVLMLEG IHGLNPRLLGAIPRAGELFRVFVHPATTLPFDRLTRVSATDLRLLRRIIRDRHHRGYSAADNIVRWPSVQAGEREHIFPY QDEAEAVFDTSLIYEPAVLKVYAERYLLEVPPDHPAFPTAHRLRYLVDRFVSIYPDHVPPTSLIREFIGGSGFEY >Mature_714_residues AIRPQDLSRPPGPALERGPLLARMDAAGRERLLARAERLTFAARTRVHGDADAGRHLYLILEGTATLRREQLALRRLGPG DHFGELAGLGGRHRGETVISDGPLTVARLSPAALADLEREAPAVATQLAIGVAAALAEDLERVSGDMDLLLRGRSLPRAQ EVTVQVMGEARRIRTGTRVRDLLPEAIEGDLVVAGLLGQKPVSLATPVFTDTTVAPLTVSHWEGRQVYAHSLGLVLLEAA HQVAPALRVRMGPSLGVRQLVVVEGAGGEDRAALAARLAAGMERIVAADAPFRSEYWSTDEAQGWFLERGWSDAARLLRV RRQATVRLVSCGDVYALSMGPLLPSTGALHGWTLEPADGDDGLLLDLGRLDPRNGHGATPRPRPRRAGDMVRDHRAWLDA MDVTSVGAFNDLCISGQVTQLIRVAEGFHEKRIGQIADAIAAGRERIRIISIAGPSSSGKTTFIKRLTVQLQIDGVNPVG ISLDDYYVDREKTPRDARGEWDFEALEALDLPLLQDHVRRLLAGEAVRTAHYHFLTGRSHPEGGPVIQLRPGDVLMLEGI HGLNPRLLGAIPRAGELFRVFVHPATTLPFDRLTRVSATDLRLLRRIIRDRHHRGYSAADNIVRWPSVQAGEREHIFPYQ DEAEAVFDTSLIYEPAVLKVYAERYLLEVPPDHPAFPTAHRLRYLVDRFVSIYPDHVPPTSLIREFIGGSGFEY
Specific function: Pyrimidine salvage pathway. [C]
COG id: COG0572
COG function: function code F; Uridine kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the uridine kinase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006083 - InterPro: IPR000764 [H]
Pfam domain/function: PF00485 PRK [H]
EC number: =2.7.1.48 [H]
Molecular weight: Translated: 78415; Mature: 78283
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRPQDLSRPPGPALERGPLLARMDAAGRERLLARAERLTFAARTRVHGDADAGRHLYL CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE ILEGTATLRREQLALRRLGPGDHFGELAGLGGRHRGETVISDGPLTVARLSPAALADLER EEECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEECCCCEEEEECCCHHHHHHHH EAPAVATQLAIGVAAALAEDLERVSGDMDLLLRGRSLPRAQEVTVQVMGEARRIRTGTRV HCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH RDLLPEAIEGDLVVAGLLGQKPVSLATPVFTDTTVAPLTVSHWEGRQVYAHSLGLVLLEA HHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHH AHQVAPALRVRMGPSLGVRQLVVVEGAGGEDRAALAARLAAGMERIVAADAPFRSEYWST HHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC DEAQGWFLERGWSDAARLLRVRRQATVRLVSCGDVYALSMGPLLPSTGALHGWTLEPADG CCCCCCEECCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCEECCCCC DDGLLLDLGRLDPRNGHGATPRPRPRRAGDMVRDHRAWLDAMDVTSVGAFNDLCISGQVT CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHH QLIRVAEGFHEKRIGQIADAIAAGRERIRIISIAGPSSSGKTTFIKRLTVQLQIDGVNPV HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCC GISLDDYYVDREKTPRDARGEWDFEALEALDLPLLQDHVRRLLAGEAVRTAHYHFLTGRS CCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHEEEEEEECCC HPEGGPVIQLRPGDVLMLEGIHGLNPRLLGAIPRAGELFRVFVHPATTLPFDRLTRVSAT CCCCCCEEEECCCCEEEECCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCHHHHHHCCHH DLRLLRRIIRDRHHRGYSAADNIVRWPSVQAGEREHIFPYQDEAEAVFDTSLIYEPAVLK HHHHHHHHHHHHCCCCCCHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHH VYAERYLLEVPPDHPAFPTAHRLRYLVDRFVSIYPDHVPPTSLIREFIGGSGFEY HHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure AIRPQDLSRPPGPALERGPLLARMDAAGRERLLARAERLTFAARTRVHGDADAGRHLYL CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE ILEGTATLRREQLALRRLGPGDHFGELAGLGGRHRGETVISDGPLTVARLSPAALADLER EEECCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEECCCCEEEEECCCHHHHHHHH EAPAVATQLAIGVAAALAEDLERVSGDMDLLLRGRSLPRAQEVTVQVMGEARRIRTGTRV HCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHH RDLLPEAIEGDLVVAGLLGQKPVSLATPVFTDTTVAPLTVSHWEGRQVYAHSLGLVLLEA HHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHH AHQVAPALRVRMGPSLGVRQLVVVEGAGGEDRAALAARLAAGMERIVAADAPFRSEYWST HHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC DEAQGWFLERGWSDAARLLRVRRQATVRLVSCGDVYALSMGPLLPSTGALHGWTLEPADG CCCCCCEECCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCEECCCCC DDGLLLDLGRLDPRNGHGATPRPRPRRAGDMVRDHRAWLDAMDVTSVGAFNDLCISGQVT CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHH QLIRVAEGFHEKRIGQIADAIAAGRERIRIISIAGPSSSGKTTFIKRLTVQLQIDGVNPV HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCC GISLDDYYVDREKTPRDARGEWDFEALEALDLPLLQDHVRRLLAGEAVRTAHYHFLTGRS CCCCHHEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHEEEEEEECCC HPEGGPVIQLRPGDVLMLEGIHGLNPRLLGAIPRAGELFRVFVHPATTLPFDRLTRVSAT CCCCCCEEEECCCCEEEECCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCHHHHHHCCHH DLRLLRRIIRDRHHRGYSAADNIVRWPSVQAGEREHIFPYQDEAEAVFDTSLIYEPAVLK HHHHHHHHHHHHCCCCCCHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHH VYAERYLLEVPPDHPAFPTAHRLRYLVDRFVSIYPDHVPPTSLIREFIGGSGFEY HHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA