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The map label for this gene is ydfH [C]

Identifier: 220914796

GI number: 220914796

Start: 157429

End: 158094

Strand: Reverse

Name: ydfH [C]

Synonym: Mnod_7930

Alternate gene names: 220914796

Gene position: 158094-157429 (Counterclockwise)

Preceding gene: 220914802

Following gene: 220914795

Centisome position: 34.51

GC content: 69.97

Gene sequence:

>666_bases
GTGCGGGCGGGTCTGCACGAGCGGGCGGCCGAACGTCTCCGCAACATGATCGTGCGCGGCGACCTGGCGCCCGGCGCAGC
CTTAATCGAGGTGGAGCTTTCGGAGATGCTCGGCATCTCGCGCACGCCGATCCGGGAGGCGATCAAGCTTCTCGCCCAGC
AGGGCCTCGTCGAGTTGCGGGCGAACCGCTCACCTTGCGTGCGGCCGTTGCGGGTGGCCGAGATCCGCGAACTTTTCGAG
GCATTGGCCGGGATCGAGCGCATCGCGGCCGAGTTCGCCGCCATGCGCATCACGGAGGCGGAGCTCAAGCGCCTGCACGA
GCTCCAGGCCGAGATCGTGCGCGAGCACAAGGCGGGGCGCCGCGACAGCTATTCGGCCGCGAACCGCACCATCCACCGCA
CCATCGTGCTTGCGGCGCGCAACGCGCCGCTCGCCGAGGCGCATGCCGCCCTGCTCTCGCGCGCCGAACAGGTGCGAGTC
TTCGCGCTCGGGCTTGAGGATCGCTGGGAGCAGTCGATCCTCGAACACCAGGCCATCCTGGACGCGCTCGAGACGCGCGA
TTCGGGCCAAGCCGGCCGCCTCCTGCAAGAGCATGTCGGCCAGACGGCCGATGTGGTCGCTGCGAGCCTTGCCGGCCGAA
ACAGCCCGACCTCGAGCGCGGCCTGA

Upstream 100 bases:

>100_bases
GCAGCGCCCTCCACCTACGCCGACCGAAGCAGCCGCCCCTCGCCGTCGCGGTCGTCCGCGCAAACGCCTCGAACCAGCGA
TCGGCGCCGATCAGCGCGTC

Downstream 100 bases:

>100_bases
CATCTCATAGCCGAAGGGGAATACTAGGATGAAAGCAGTGCGACGCTGGTTGGCCTGCCTGGCCATGATCCCGCTCATGG
CCGCCGCCGCCTCGGCCCAA

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; Regulatory Protein; GntR Domain-Containing Protein; FCD Domain Protein; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; Regulatory Protein GntR HTHGntR C-Terminal Domain; Transcriptional Regulatory Protein; GntR Domain Protein; GntR Transcriptional Regulator GntR; Regulatory Protein GntR HTH; GntR Transcriptional Regulator; Transcriptional Repressor MdcY; Transcriptional Regulatory Protein GntR Family; GntR Family Transcription Regulator; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRAGLHERAAERLRNMIVRGDLAPGAALIEVELSEMLGISRTPIREAIKLLAQQGLVELRANRSPCVRPLRVAEIRELFE
ALAGIERIAAEFAAMRITEAELKRLHELQAEIVREHKAGRRDSYSAANRTIHRTIVLAARNAPLAEAHAALLSRAEQVRV
FALGLEDRWEQSILEHQAILDALETRDSGQAGRLLQEHVGQTADVVAASLAGRNSPTSSAA

Sequences:

>Translated_221_residues
MRAGLHERAAERLRNMIVRGDLAPGAALIEVELSEMLGISRTPIREAIKLLAQQGLVELRANRSPCVRPLRVAEIRELFE
ALAGIERIAAEFAAMRITEAELKRLHELQAEIVREHKAGRRDSYSAANRTIHRTIVLAARNAPLAEAHAALLSRAEQVRV
FALGLEDRWEQSILEHQAILDALETRDSGQAGRLLQEHVGQTADVVAASLAGRNSPTSSAA
>Mature_221_residues
MRAGLHERAAERLRNMIVRGDLAPGAALIEVELSEMLGISRTPIREAIKLLAQQGLVELRANRSPCVRPLRVAEIRELFE
ALAGIERIAAEFAAMRITEAELKRLHELQAEIVREHKAGRRDSYSAANRTIHRTIVLAARNAPLAEAHAALLSRAEQVRV
FALGLEDRWEQSILEHQAILDALETRDSGQAGRLLQEHVGQTADVVAASLAGRNSPTSSAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=196, Percent_Identity=28.0612244897959, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24246; Mature: 24246

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGLHERAAERLRNMIVRGDLAPGAALIEVELSEMLGISRTPIREAIKLLAQQGLVELR
CCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ANRSPCVRPLRVAEIRELFEALAGIERIAAEFAAMRITEAELKRLHELQAEIVREHKAGR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RDSYSAANRTIHRTIVLAARNAPLAEAHAALLSRAEQVRVFALGLEDRWEQSILEHQAIL
CCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHH
DALETRDSGQAGRLLQEHVGQTADVVAASLAGRNSPTSSAA
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRAGLHERAAERLRNMIVRGDLAPGAALIEVELSEMLGISRTPIREAIKLLAQQGLVELR
CCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ANRSPCVRPLRVAEIRELFEALAGIERIAAEFAAMRITEAELKRLHELQAEIVREHKAGR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RDSYSAANRTIHRTIVLAARNAPLAEAHAALLSRAEQVRVFALGLEDRWEQSILEHQAIL
CCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHH
DALETRDSGQAGRLLQEHVGQTADVVAASLAGRNSPTSSAA
HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA