| Definition | Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence. |
|---|---|
| Accession | NC_011887 |
| Length | 458,070 |
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The map label for this gene is ycdF [H]
Identifier: 220914793
GI number: 220914793
Start: 154603
End: 155409
Strand: Reverse
Name: ycdF [H]
Synonym: Mnod_7927
Alternate gene names: 220914793
Gene position: 155409-154603 (Counterclockwise)
Preceding gene: 220914794
Following gene: 220914792
Centisome position: 33.93
GC content: 70.26
Gene sequence:
>807_bases ATGACGGACGCAGAGCCGATCGCCGTCGACGGCAATCGCCGCCTCGCCGGCCAGACCTGCATCGTTACCGGGGCGGCCTC CGGGATCGGGCGAGCCATCGCGCGCGTGTTCGCCCGCCACGGCGCCCATGTCGTGGTCGCCGACATCTCGGAGACGGTGC TCGAAGGCGGCGAGCCGACGGTTAAGCTGATCGCCCACGAGGGCGGCAGCGCCAGCTTCCGCAAGACCGACGTCTCAGAT GCCACGGCGGTGGACGCGCTCGTGGCCGACACATCGCGCCTCACCGGCCGGCTCGACGTGATCGTTAACAATGCCTGCAT CCGGCATGCCCGCCGCCTCGCCGAACTCGAGGAAGGCGACTGGGACCGCATGATGGCAGTGAACCTGAAGGGCGTCTTCC TATGCTGCCGGGCCGCGGTGCGCCAGATGCTGACGCAGGAGATCCGGAACGAGGCGCGCGGGCGCATCATCAATCTCTCG TCGCAGCACGGGATGATCGCCGCGCCTGACGACCTCGCCTACGGCGTCGGCAAGGCCGGCATCGCCTACCTGACACGCCA GGTGGCGGCCGATTACGCAGCCGACGGAATCATCTGCAACGCCGTCGCGCCCGGCAAGATCGTGACCGGCCAGGGCGGCC GGCTGCTGGACGAGGCGGTGCTCGACCGCGCCCGCCGGCGCACGCCCTGGCCGCGCTTCGGTCGCCCCGACGATGTCGCG CAGGCGGCCCTGTTCCTGGCGAGCGGCGAGGCGAGCTTCGTGACCGGCATCAACCTGATGGTCGATGGCGGCTGGATGGC CGCATAG
Upstream 100 bases:
>100_bases TCACGGCCGACACCACCTACCGGCCAGCCTTCGACCTCGCGGCAGTCGCACGAGATTTCCTCCAAGAGCCTTTCCTCCAA GAGCCCTGGAGCGCACGGCA
Downstream 100 bases:
>100_bases GCCTATCTCGGCGCCGGCGGTTCCGATCGGCAGAGGCGCGATTCACGGGCGCAGTGCCGCCATGTCCTGCTGTGCGGGGC AGAACCTCTCACCCAACGGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MTDAEPIAVDGNRRLAGQTCIVTGAASGIGRAIARVFARHGAHVVVADISETVLEGGEPTVKLIAHEGGSASFRKTDVSD ATAVDALVADTSRLTGRLDVIVNNACIRHARRLAELEEGDWDRMMAVNLKGVFLCCRAAVRQMLTQEIRNEARGRIINLS SQHGMIAAPDDLAYGVGKAGIAYLTRQVAADYAADGIICNAVAPGKIVTGQGGRLLDEAVLDRARRRTPWPRFGRPDDVA QAALFLASGEASFVTGINLMVDGGWMAA
Sequences:
>Translated_268_residues MTDAEPIAVDGNRRLAGQTCIVTGAASGIGRAIARVFARHGAHVVVADISETVLEGGEPTVKLIAHEGGSASFRKTDVSD ATAVDALVADTSRLTGRLDVIVNNACIRHARRLAELEEGDWDRMMAVNLKGVFLCCRAAVRQMLTQEIRNEARGRIINLS SQHGMIAAPDDLAYGVGKAGIAYLTRQVAADYAADGIICNAVAPGKIVTGQGGRLLDEAVLDRARRRTPWPRFGRPDDVA QAALFLASGEASFVTGINLMVDGGWMAA >Mature_267_residues TDAEPIAVDGNRRLAGQTCIVTGAASGIGRAIARVFARHGAHVVVADISETVLEGGEPTVKLIAHEGGSASFRKTDVSDA TAVDALVADTSRLTGRLDVIVNNACIRHARRLAELEEGDWDRMMAVNLKGVFLCCRAAVRQMLTQEIRNEARGRIINLSS QHGMIAAPDDLAYGVGKAGIAYLTRQVAADYAADGIICNAVAPGKIVTGQGGRLLDEAVLDRARRRTPWPRFGRPDDVAQ AALFLASGEASFVTGINLMVDGGWMAA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=36.0153256704981, Blast_Score=131, Evalue=8e-31, Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=34.1085271317829, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=28.4046692607004, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=32.6271186440678, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=31.0483870967742, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=30.4347826086957, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI4504505, Length=202, Percent_Identity=35.1485148514851, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=31.1787072243346, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI7705925, Length=261, Percent_Identity=28.735632183908, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI5031737, Length=262, Percent_Identity=30.9160305343511, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=28.0155642023346, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=30.1158301158301, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI209862901, Length=207, Percent_Identity=32.3671497584541, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI19923983, Length=207, Percent_Identity=32.3671497584541, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI109715829, Length=259, Percent_Identity=25.8687258687259, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=34.9809885931559, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=32.9411764705882, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=33.7254901960784, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=31.1284046692607, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=32, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=33.9920948616601, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=30.3501945525292, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=31.6205533596838, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=30.9236947791165, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=30.1158301158301, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=31.7647058823529, Blast_Score=87, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=34.2629482071713, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=34.6613545816733, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=29.1512915129151, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.9701492537313, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=28.2051282051282, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17551412, Length=276, Percent_Identity=31.1594202898551, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=30.2583025830258, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=28.2051282051282, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=27.4725274725275, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17562990, Length=272, Percent_Identity=31.9852941176471, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560676, Length=263, Percent_Identity=28.5171102661597, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=28.0442804428044, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=28.1481481481481, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=29.520295202952, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17560150, Length=275, Percent_Identity=29.0909090909091, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=30.2325581395349, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115534694, Length=258, Percent_Identity=28.6821705426357, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17561402, Length=265, Percent_Identity=30.5660377358491, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=28.030303030303, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17531453, Length=283, Percent_Identity=27.5618374558304, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536651, Length=265, Percent_Identity=29.4339622641509, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17560220, Length=276, Percent_Identity=27.536231884058, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=30.8880308880309, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=30.5882352941176, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=26.1818181818182, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=28.3333333333333, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17564282, Length=209, Percent_Identity=26.7942583732057, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=28.4671532846715, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568967, Length=234, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=28.7313432835821, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560332, Length=277, Percent_Identity=27.0758122743682, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567345, Length=170, Percent_Identity=30.5882352941176, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17555612, Length=252, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203117, Length=199, Percent_Identity=25.6281407035176, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=26.9035532994924, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193203115, Length=197, Percent_Identity=25.8883248730964, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71997099, Length=222, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=25.1968503937008, Blast_Score=79, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=37.109375, Blast_Score=127, Evalue=6e-30, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=34.1269841269841, Blast_Score=127, Evalue=8e-30, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=34.1176470588235, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=32.824427480916, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=34.2412451361868, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI18859837, Length=211, Percent_Identity=34.1232227488152, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=30.6201550387597, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=33.59375, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI21357673, Length=263, Percent_Identity=28.1368821292776, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24649181, Length=173, Percent_Identity=30.635838150289, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24665243, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331218, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 28347; Mature: 28216
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAEPIAVDGNRRLAGQTCIVTGAASGIGRAIARVFARHGAHVVVADISETVLEGGEPT CCCCCCEEECCCCEECCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCE VKLIAHEGGSASFRKTDVSDATAVDALVADTSRLTGRLDVIVNNACIRHARRLAELEEGD EEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCC WDRMMAVNLKGVFLCCRAAVRQMLTQEIRNEARGRIINLSSQHGMIAAPDDLAYGVGKAG CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCCHHHHCCCHHH IAYLTRQVAADYAADGIICNAVAPGKIVTGQGGRLLDEAVLDRARRRTPWPRFGRPDDVA HHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH QAALFLASGEASFVTGINLMVDGGWMAA HHHHHHCCCCCCEEEEEEEEEECCEECC >Mature Secondary Structure TDAEPIAVDGNRRLAGQTCIVTGAASGIGRAIARVFARHGAHVVVADISETVLEGGEPT CCCCCEEECCCCEECCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCE VKLIAHEGGSASFRKTDVSDATAVDALVADTSRLTGRLDVIVNNACIRHARRLAELEEGD EEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCC WDRMMAVNLKGVFLCCRAAVRQMLTQEIRNEARGRIINLSSQHGMIAAPDDLAYGVGKAG CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCCHHHHCCCHHH IAYLTRQVAADYAADGIICNAVAPGKIVTGQGGRLLDEAVLDRARRRTPWPRFGRPDDVA HHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH QAALFLASGEASFVTGINLMVDGGWMAA HHHHHHCCCCCCEEEEEEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9298659 [H]