Click here to switch to the map view.

The map label for this gene is hycF [C]

Identifier: 220905145

GI number: 220905145

Start: 2272316

End: 2272894

Strand: Direct

Name: hycF [C]

Synonym: Ddes_1883

Alternate gene names: 220905145

Gene position: 2272316-2272894 (Clockwise)

Preceding gene: 220905144

Following gene: 220905146

Centisome position: 79.08

GC content: 60.1

Gene sequence:

>579_bases
ATGGCGGGCTTTCTTAAAGTTTTATTCCGCAACCTGCTTGAAGGCCCCAGCACCGATCCTTTTCCTCTGGGCGAAACCTT
CACCCCCGAGCGCCTGCGCGGCAGGGCCGTTGTTGACCCGGACCTGTGCATGGGCTGCGGCATCTGCCGTCACTCCTGCG
CTGCGGGGGCCATCCATATCGGCCAGTTGCCCGACAGTTCAGGCTTTACCATAACCATCTGGCAAAACTCGTGCTGCCTG
TGTGCCTCGTGCCGCCACTACTGCCCCACCGGGGCCATGAGCATCAGCACAGACTGGCATTCGGCGCACGCCCAGACCGA
AAAATATAAAAGGCTTGAGCAGCACACCATCAAGTATGAACCGTGCGCCCAGTGCGGCGAGCTTATGCGGCCCATACCCA
AGGCACTGGCTGAAAAGCTTTATGCCTGGAACGACGAGATCGACCCCGAGCTGACACGCAGGCTCTGTCCCAAATGCCGT
CAGATTGAAGACGCCAAGCGCAACGCCTGCCTGCTGCCGGAACCGGGCGAAACCCCGGTGGAAAAGGCCGTAACCTCGGC
GGCTCCCACAAAAGATTAG

Upstream 100 bases:

>100_bases
GTGAACGTACCCGGCTGCCCCCCGCGCCCCCAGGCCATACTTGAAGGCGTAGTGCTGGCCCGGTCCATCTGGCTGAAAAA
ACTGGGCGTGGAGGAATAAT

Downstream 100 bases:

>100_bases
CGGTCTGCACCGCGGAGAACATATGCAAGAGACCATTAACGGCAACGCCAAAGTCATCGAGGACCTTTCCGCCCTCTGCA
CCGAGGCCGACGCCATCCAC

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Hydrogenase-4 Component H; Hydrogenase Subunit CooX

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAGFLKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVVDPDLCMGCGICRHSCAAGAIHIGQLPDSSGFTITIWQNSCCL
CASCRHYCPTGAMSISTDWHSAHAQTEKYKRLEQHTIKYEPCAQCGELMRPIPKALAEKLYAWNDEIDPELTRRLCPKCR
QIEDAKRNACLLPEPGETPVEKAVTSAAPTKD

Sequences:

>Translated_192_residues
MAGFLKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVVDPDLCMGCGICRHSCAAGAIHIGQLPDSSGFTITIWQNSCCL
CASCRHYCPTGAMSISTDWHSAHAQTEKYKRLEQHTIKYEPCAQCGELMRPIPKALAEKLYAWNDEIDPELTRRLCPKCR
QIEDAKRNACLLPEPGETPVEKAVTSAAPTKD
>Mature_191_residues
AGFLKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVVDPDLCMGCGICRHSCAAGAIHIGQLPDSSGFTITIWQNSCCLC
ASCRHYCPTGAMSISTDWHSAHAQTEKYKRLEQHTIKYEPCAQCGELMRPIPKALAEKLYAWNDEIDPELTRRLCPKCRQ
IEDAKRNACLLPEPGETPVEKAVTSAAPTKD

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1143

COG function: function code C; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21236; Mature: 21104

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGFLKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVVDPDLCMGCGICRHSCAAGAIHI
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE
GQLPDSSGFTITIWQNSCCLCASCRHYCPTGAMSISTDWHSAHAQTEKYKRLEQHTIKYE
CCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCC
PCAQCGELMRPIPKALAEKLYAWNDEIDPELTRRLCPKCRQIEDAKRNACLLPEPGETPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHCCEECCCCCCCCHH
EKAVTSAAPTKD
HHHHHCCCCCCC
>Mature Secondary Structure 
AGFLKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVVDPDLCMGCGICRHSCAAGAIHI
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE
GQLPDSSGFTITIWQNSCCLCASCRHYCPTGAMSISTDWHSAHAQTEKYKRLEQHTIKYE
CCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCC
PCAQCGELMRPIPKALAEKLYAWNDEIDPELTRRLCPKCRQIEDAKRNACLLPEPGETPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHCCEECCCCCCCCHH
EKAVTSAAPTKD
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA