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The map label for this gene is yfhQ [C]

Identifier: 220904214

GI number: 220904214

Start: 1095495

End: 1096247

Strand: Direct

Name: yfhQ [C]

Synonym: Ddes_0941

Alternate gene names: 220904214

Gene position: 1095495-1096247 (Clockwise)

Preceding gene: 220904213

Following gene: 220904215

Centisome position: 38.12

GC content: 58.43

Gene sequence:

>753_bases
ATGGCTTCTCTGCTTGACGGGTTGGATATTGTTCTGGTCAAAACACGTTTTCCTGAAAATATCGGTATGGCTGCGCGGGC
TTGCGTCAATATGGGCTGTTCATCGCTGTCTCTTGTGGATCCCGAGCGGTGGGACAAGGAGAAGGCTCGCCCGCTTGCCA
CGCCCAAAGGGCAGGATCTGCTGGATGACGTAAAGGTCTATGCTGACCTGCCGGAAGCCGTAGCTCCCGTAACCCTTGTG
GTAGGAACCACAGCGCGGGTGGGGGGCTGGCGTCAATCCCTGCTCTCGCCGGGGCGTGCCGCTGCGGACGTGGCGGAGGC
CCTGGCGCACGGCGAAAGGGTGGCCCTTGTTTTTGGCCCGGAAGACCGGGGCCTGAACAATGAAGAAATAACCCATTGCC
ATAAGCTTGTGACCATACCAACGGACCCTGCGGCCAGTTCGCTTAACCTTGCGCAGGCCGTGTTGCTGCTTTTATATGAA
TGCGCCGATGCCCTGCGCAACAGACCGGGAAAAGACGCCGGAAATGCAGAAAAAAAACATCCCGGCGGGGGCAGGCAGGT
AACGGCGGCAGAGCAGGAGCGTCTGATGGAATCCCTGAAAGACATGCTGCTGCGTCTCGATTACCTGCATGGCGATAATC
CTGATTATTTTATCATGCCCTGGCGGCGGCTCTTTAGCAGGGCCGGTTTACGGCGTCATGAGTATGACGCGTTGATGGGC
CTGTGCCGTCAGGTGCGCCACAAGCTGGGCTGA

Upstream 100 bases:

>100_bases
GCGGCAAGCCGTATCTGGCCTCAAGTGCCGGCGCAAACACTGCCGGTGGCCTCCGATCCGCTGCAACTGGTGCTGGCCCT
GATCGGAGGCGTGTGCTGAT

Downstream 100 bases:

>100_bases
CCCGCAGGTGCCGCACTGTCCAATATTTTGCCCGCTGACGCTCGTCAGCGGGCTTTTGTTTTGTGGGGGGCAGCCCGGGC
ACTGCAACGTAATCCGCCCT

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDLLDDVKVYADLPEAVAPVTLV
VGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYE
CADALRNRPGKDAGNAEKKHPGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPWRRLFSRAGLRRHEYDALMG
LCRQVRHKLG

Sequences:

>Translated_250_residues
MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDLLDDVKVYADLPEAVAPVTLV
VGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYE
CADALRNRPGKDAGNAEKKHPGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPWRRLFSRAGLRRHEYDALMG
LCRQVRHKLG
>Mature_249_residues
ASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDLLDDVKVYADLPEAVAPVTLVV
GTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYEC
ADALRNRPGKDAGNAEKKHPGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPWRRLFSRAGLRRHEYDALMGL
CRQVRHKLG

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=247, Percent_Identity=33.6032388663968, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790865, Length=179, Percent_Identity=34.6368715083799, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27409; Mature: 27278

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDL
CCCHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHCHHHCCCCCCCCCCHH
LDDVKVYADLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGP
HHHHHHHHCCHHHHHCEEHEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECC
EDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNRPGKDAGNAEKKH
CCCCCCHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPWRRLFSRAGLRRHEYDALMG
CCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCHHHHHHHHH
LCRQVRHKLG
HHHHHHHHCC
>Mature Secondary Structure 
ASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDL
CCHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHCHHHCCCCCCCCCCHH
LDDVKVYADLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGP
HHHHHHHHCCHHHHHCEEHEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECC
EDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNRPGKDAGNAEKKH
CCCCCCHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPWRRLFSRAGLRRHEYDALMG
CCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCHHHHHHHHH
LCRQVRHKLG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]