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The map label for this gene is ygcJ [H]

Identifier: 220904199

GI number: 220904199

Start: 1080761

End: 1081813

Strand: Direct

Name: ygcJ [H]

Synonym: Ddes_0926

Alternate gene names: 220904199

Gene position: 1080761-1081813 (Clockwise)

Preceding gene: 220904198

Following gene: 220904200

Centisome position: 37.61

GC content: 53.09

Gene sequence:

>1053_bases
ATGCGTCATCTTGAACTTCATATACTGCAATCCGTTCCTGTTGCCTGCCTCAACCGTGACGATCTTGGCTCGCCCAAAAC
AGCTGTTTTTGGCGGCGTACAGCGTGCCCGTGTTTCCAGCCAATGCTGGAAAAGAGCAATACGTGAATATTGCGGCGAAC
TGTTGCCCCAACATTTTAAGGGAGAACGCACACGCCTGATTGTGGAACCTCTGCGTGATATTTTTATAAATACGTATGGC
TTGGACGAGGCCACAGCATTGGTCAAGGCCAACGACCTGGCAGAAGGCCTTGCAACGCTCGATAAGGATGCAGCCAAAAA
AAATAAACTTCAGACAAAAACACTTTTTTTTACCAGCAGGTCAGAGTTGGAGGCATTGGCCGCCATCGCTGTAAATAATG
AGAATATAAAAAAACATGCCAAAACTTTTGCCCAGTCTCTCTGCACAGACGCGGCGGATATTGCCCTGTTTGGCCGCATG
GTCGCCAGCGCGCCCGAGCTTACTCTGGAAGGAGCGGCCATGTTTTCCCACGCCCTTTCCACGCACAAGGCTGATAATGA
AATAGATTTTTTTTCCGCTCTCGATGATTTGCTGCCCTCAGAGGAAACGGGAGCCGGCATGACTGGTACACTGGAGTTTA
ACGCTGCCGCCTACTACCGTTTTTGTGCTCTTAATCTGGACATGCTGGCGGATGCTGACCATCTTGGTGCACTCAGCCCC
GATGAGCGGCAGGGCATCGTGGCGGCCTTCGTGGAAGCAACGCTCAAGGCCATGCCCGTTGCCAGAAAAAACTCTATGAA
TGCCAACACGATGCCTGCCTACGTGTTGTGCGTGTTGCGTGACAGCGGGCAGCCTGTGCAACTGGTCAATGCCTTTGAAA
AAGCCGTGTACTCGCCCGATGGCAGGGGATATGTGGAGGCCTCGATCAAACGTATGGAGGAGGAATACCAGCGCCTGGAA
AACACCTGGGGCCTTACGGCGGTGGAAACCATCCGCATGCCACTGCAGAGCCTTGGCGAACTCTTGCAGGGGGTGCGGCG
GCATGTGCGCTGA

Upstream 100 bases:

>100_bases
ATTCCATAAGGGGCTGGGCAGTGCTCGCGGATTTGGTTTTGGCATGCTGCTTCTCAGCCCTGTGCGGTAATCACTACATA
CGATTTCAGGAGAAAATACC

Downstream 100 bases:

>100_bases
CGTTTGCTGCCTTGCCCTGCGCTTGCAGGCCCCCATGCTCTCGTTTGGCAATGAAAGCCGGTTTAACCGCAGGTGTACAG
CTTCTTTGCCTTCAAAAAGC

Product: Cse4 family CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MRHLELHILQSVPVACLNRDDLGSPKTAVFGGVQRARVSSQCWKRAIREYCGELLPQHFKGERTRLIVEPLRDIFINTYG
LDEATALVKANDLAEGLATLDKDAAKKNKLQTKTLFFTSRSELEALAAIAVNNENIKKHAKTFAQSLCTDAADIALFGRM
VASAPELTLEGAAMFSHALSTHKADNEIDFFSALDDLLPSEETGAGMTGTLEFNAAAYYRFCALNLDMLADADHLGALSP
DERQGIVAAFVEATLKAMPVARKNSMNANTMPAYVLCVLRDSGQPVQLVNAFEKAVYSPDGRGYVEASIKRMEEEYQRLE
NTWGLTAVETIRMPLQSLGELLQGVRRHVR

Sequences:

>Translated_350_residues
MRHLELHILQSVPVACLNRDDLGSPKTAVFGGVQRARVSSQCWKRAIREYCGELLPQHFKGERTRLIVEPLRDIFINTYG
LDEATALVKANDLAEGLATLDKDAAKKNKLQTKTLFFTSRSELEALAAIAVNNENIKKHAKTFAQSLCTDAADIALFGRM
VASAPELTLEGAAMFSHALSTHKADNEIDFFSALDDLLPSEETGAGMTGTLEFNAAAYYRFCALNLDMLADADHLGALSP
DERQGIVAAFVEATLKAMPVARKNSMNANTMPAYVLCVLRDSGQPVQLVNAFEKAVYSPDGRGYVEASIKRMEEEYQRLE
NTWGLTAVETIRMPLQSLGELLQGVRRHVR
>Mature_350_residues
MRHLELHILQSVPVACLNRDDLGSPKTAVFGGVQRARVSSQCWKRAIREYCGELLPQHFKGERTRLIVEPLRDIFINTYG
LDEATALVKANDLAEGLATLDKDAAKKNKLQTKTLFFTSRSELEALAAIAVNNENIKKHAKTFAQSLCTDAADIALFGRM
VASAPELTLEGAAMFSHALSTHKADNEIDFFSALDDLLPSEETGAGMTGTLEFNAAAYYRFCALNLDMLADADHLGALSP
DERQGIVAAFVEATLKAMPVARKNSMNANTMPAYVLCVLRDSGQPVQLVNAFEKAVYSPDGRGYVEASIKRMEEEYQRLE
NTWGLTAVETIRMPLQSLGELLQGVRRHVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=341, Percent_Identity=30.4985337243402, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 38550; Mature: 38550

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHLELHILQSVPVACLNRDDLGSPKTAVFGGVQRARVSSQCWKRAIREYCGELLPQHFK
CCCCCEEHHHHCCHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCHHHHC
GERTRLIVEPLRDIFINTYGLDEATALVKANDLAEGLATLDKDAAKKNKLQTKTLFFTSR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECH
SELEALAAIAVNNENIKKHAKTFAQSLCTDAADIALFGRMVASAPELTLEGAAMFSHALS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
THKADNEIDFFSALDDLLPSEETGAGMTGTLEFNAAAYYRFCALNLDMLADADHLGALSP
HCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHCCCHHCCCCCC
DERQGIVAAFVEATLKAMPVARKNSMNANTMPAYVLCVLRDSGQPVQLVNAFEKAVYSPD
CHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
GRGYVEASIKRMEEEYQRLENTWGLTAVETIRMPLQSLGELLQGVRRHVR
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRHLELHILQSVPVACLNRDDLGSPKTAVFGGVQRARVSSQCWKRAIREYCGELLPQHFK
CCCCCEEHHHHCCHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCHHHHC
GERTRLIVEPLRDIFINTYGLDEATALVKANDLAEGLATLDKDAAKKNKLQTKTLFFTSR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECH
SELEALAAIAVNNENIKKHAKTFAQSLCTDAADIALFGRMVASAPELTLEGAAMFSHALS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
THKADNEIDFFSALDDLLPSEETGAGMTGTLEFNAAAYYRFCALNLDMLADADHLGALSP
HCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHCCCHHCCCCCC
DERQGIVAAFVEATLKAMPVARKNSMNANTMPAYVLCVLRDSGQPVQLVNAFEKAVYSPD
CHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
GRGYVEASIKRMEEEYQRLENTWGLTAVETIRMPLQSLGELLQGVRRHVR
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]