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The map label for this gene is ygcH [H]

Identifier: 220904198

GI number: 220904198

Start: 1080107

End: 1080730

Strand: Direct

Name: ygcH [H]

Synonym: Ddes_0925

Alternate gene names: 220904198

Gene position: 1080107-1080730 (Clockwise)

Preceding gene: 220904197

Following gene: 220904199

Centisome position: 37.59

GC content: 56.25

Gene sequence:

>624_bases
ATGACCTGGATGACCCGCTTTATGGTGGAGCTGCCAGCCCTGCACCGCAACAGGCTGAGCGACTGCTACGCCTGGCACAA
GGCCATCTGGCAGTGTTTTCCCAACAGGCCAGACGCCAGTCGCGATTTCCTGTTCCGGCTGGATGAAGTTCCCGCAGGGA
CTCTGGTGCACGTGCTCAGCCCGCATGAACCGCAGCGTCCTGATTTTTGTACAGAGGACCACTGGCAGATCAAGGCTGTA
CCGCCCTGTTTTCTGAAGTACAACTGTTACCGCTTTGATGTGATCTGCAATCCTGGCCGCAAGGTAGAGGCCTTTACCAG
TGATGGACAACGCAAAAAAAACAGCCGCCGTGAGGCAATCATAAAACCGGATGAGCAGAACGCATGGCTTGACCGCAAAG
CGGCGGCCAACGGCTTTGAAGTCCTGCCCGGCATGCGTAGTATAGATCCCTCAACCAGATATTCCTTCAGAAAAGACCAT
CGGTCGGGAACGCATATCGGCGTGCGCTTCAGCGGTGTTTTGCGCGTTACTCAGCGGGACGAATTCTGCCGGGCATTCCA
TAAGGGGCTGGGCAGTGCTCGCGGATTTGGTTTTGGCATGCTGCTTCTCAGCCCTGTGCGGTAA

Upstream 100 bases:

>100_bases
GGGCGCAGCAGTTCTGGGCACCGGCCGCTCAGCCTGCAGGACTGGATAACACGTCCGGGCAGCAGCCAGATACCCCACAG
GACACTCCGGAGACCATGCC

Downstream 100 bases:

>100_bases
TCACTACATACGATTTCAGGAGAAAATACCATGCGTCATCTTGAACTTCATATACTGCAATCCGTTCCTGTTGCCTGCCT
CAACCGTGACGATCTTGGCT

Product: Cse3 family CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTWMTRFMVELPALHRNRLSDCYAWHKAIWQCFPNRPDASRDFLFRLDEVPAGTLVHVLSPHEPQRPDFCTEDHWQIKAV
PPCFLKYNCYRFDVICNPGRKVEAFTSDGQRKKNSRREAIIKPDEQNAWLDRKAAANGFEVLPGMRSIDPSTRYSFRKDH
RSGTHIGVRFSGVLRVTQRDEFCRAFHKGLGSARGFGFGMLLLSPVR

Sequences:

>Translated_207_residues
MTWMTRFMVELPALHRNRLSDCYAWHKAIWQCFPNRPDASRDFLFRLDEVPAGTLVHVLSPHEPQRPDFCTEDHWQIKAV
PPCFLKYNCYRFDVICNPGRKVEAFTSDGQRKKNSRREAIIKPDEQNAWLDRKAAANGFEVLPGMRSIDPSTRYSFRKDH
RSGTHIGVRFSGVLRVTQRDEFCRAFHKGLGSARGFGFGMLLLSPVR
>Mature_206_residues
TWMTRFMVELPALHRNRLSDCYAWHKAIWQCFPNRPDASRDFLFRLDEVPAGTLVHVLSPHEPQRPDFCTEDHWQIKAVP
PCFLKYNCYRFDVICNPGRKVEAFTSDGQRKKNSRREAIIKPDEQNAWLDRKAAANGFEVLPGMRSIDPSTRYSFRKDHR
SGTHIGVRFSGVLRVTQRDEFCRAFHKGLGSARGFGFGMLLLSPVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=195, Percent_Identity=31.2820512820513, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010179 [H]

Pfam domain/function: PF08798 CRISPR_assoc [H]

EC number: NA

Molecular weight: Translated: 24014; Mature: 23883

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWMTRFMVELPALHRNRLSDCYAWHKAIWQCFPNRPDASRDFLFRLDEVPAGTLVHVLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCEEEEEEC
PHEPQRPDFCTEDHWQIKAVPPCFLKYNCYRFDVICNPGRKVEAFTSDGQRKKNSRREAI
CCCCCCCCCCCCCCEEEEECCCEEEEECEEEEEEEECCCCEEEEECCCCHHHHCCCCCCC
IKPDEQNAWLDRKAAANGFEVLPGMRSIDPSTRYSFRKDHRSGTHIGVRFSGVLRVTQRD
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCHH
EFCRAFHKGLGSARGFGFGMLLLSPVR
HHHHHHHHHCCCCCCCCEEHEEECCCC
>Mature Secondary Structure 
TWMTRFMVELPALHRNRLSDCYAWHKAIWQCFPNRPDASRDFLFRLDEVPAGTLVHVLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCEEEEEEC
PHEPQRPDFCTEDHWQIKAVPPCFLKYNCYRFDVICNPGRKVEAFTSDGQRKKNSRREAI
CCCCCCCCCCCCCCEEEEECCCEEEEECEEEEEEEECCCCEEEEECCCCHHHHCCCCCCC
IKPDEQNAWLDRKAAANGFEVLPGMRSIDPSTRYSFRKDHRSGTHIGVRFSGVLRVTQRD
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCHH
EFCRAFHKGLGSARGFGFGMLLLSPVR
HHHHHHHHHCCCCCCCCEEHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]