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The map label for this gene is ctpA [H]

Identifier: 220904169

GI number: 220904169

Start: 1044455

End: 1045786

Strand: Reverse

Name: ctpA [H]

Synonym: Ddes_0896

Alternate gene names: 220904169

Gene position: 1045786-1044455 (Counterclockwise)

Preceding gene: 220904170

Following gene: 220904168

Centisome position: 36.39

GC content: 55.48

Gene sequence:

>1332_bases
ATGCGTCTTCTTTTCCGTTCACACATGTTTGCATTCCTTCTGCTCATTGGCGTTGCCGCGGCGTTTCCCGGCGTATCGTA
CGGCGCTGACGCAAAAGAGCCTGCCAAGGAAGCCCCCAATAAATTTGATGCCCTCAAACGCTTCAGCCAGGTTCTTGATC
TGGTAGAGCGTTACTATGTACGCGACGTAACTCAGGGCGACCTCATCAACGGGGCCGTCAAGGGCATGCTGCAAGGGCTT
GACCCCCACTCCACCTTCATGAGCACAGATGAATACAAAGAAATGCAGGAGACGACCTCCGGCGAATTCTTTGGCGTGGG
CATAGAAATCTCACAGGAAAACGGCCAGATTACCGTGGTGACGCCCATTGAAGATACCCCGGCCTTCCGCGCCGGCCTGC
AGCCGGGCGACATCATTCTGTCCATCAACGGCCAGCCTGTCCAAGAACTGTCGCTTCAAGAAGTGGTTTCGCGCATCCGC
GGCCCCAAGGGATCTGAAGTGGAGCTGGTCATCCTGCACAACGACTCAAAAAACCCGCAAACTGTCCGTATTACGCGCGA
TGCCATTCCCCTCATCAGCGTCAAGTCCAAAAAACTTGAGGACGGCTATTACTGGATACGCCTCACGCGCTTTTCAGAAC
GCACCACCGATGAACTGAAAGACGCGCTCAAGGCGGCAGCAAAAGAAAGCAAAGCCAATGGCGGCATCAAGGGTATTGTG
CTTGACCTGCGCAACAACCCCGGAGGCCTGCTTGACCAGGCCGTAAGCGTGGCCGATGCTTTTCTTGAAAAAGGCACCAT
TGTTTCCATCAAGGGGCGCCGCGAAAACACAGAACGTGTGTATTCGGCCAAAAAACAGAACGACGATGTGCGTGTGCCTA
TGGTGGTCCTGATCAATGCGGGATCGGCCTCGGCGTCTGAAATTGTGGCCGGGGCGCTGCGCGACCAGAAACGCGCCCTC
ATCATGGGTGAACGCTCGTTCGGCAAGGGGTCTGTGCAGAATATCATTCCCCTTTCCGATGGTTCCGGGCTCAAGCTCAC
GGTCGCCCTTTACTATACACCCAACGGCAGTTCCATTCAGGCCGAAGGCATTGTGCCTGACCTTGAAATCCCCTTTGAAG
CGCCGCGTTCCGACGACAAGGACAATCCGCGCCTGCTCCTGCGCGAGCAGGACCTGAATCGCCACCTTGAAACCAAGAAC
GACAAAAAGGCTCCCAAGGGGAAAAATACGGCCAATGATGCCCAGGAGCAGCTTGCACGGGACAATCAGTTGCGCATGGG
GCTGCAGATGGTCAAAAGCCTGCCCAAGATGAGTGAAATCAAGGCTCAGTAA

Upstream 100 bases:

>100_bases
CGGACCGGGCTTCCGACCGGGCGGCGCTTCTTTTCTGCGTTTCGGCAAGCACGCCGCGACGACTTTTACGTTCATTTCTG
TATGCCTGGAGAACGTCTGT

Downstream 100 bases:

>100_bases
CGCCCTGAAACACAATCCAGTGGCGCATGTCTGATAAAAAACATACTACAAGCCTCCTGCCCGGCCGCTCATGGCTGGTC
GGGAGGCTTTCCGCTTCATG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MRLLFRSHMFAFLLLIGVAAAFPGVSYGADAKEPAKEAPNKFDALKRFSQVLDLVERYYVRDVTQGDLINGAVKGMLQGL
DPHSTFMSTDEYKEMQETTSGEFFGVGIEISQENGQITVVTPIEDTPAFRAGLQPGDIILSINGQPVQELSLQEVVSRIR
GPKGSEVELVILHNDSKNPQTVRITRDAIPLISVKSKKLEDGYYWIRLTRFSERTTDELKDALKAAAKESKANGGIKGIV
LDLRNNPGGLLDQAVSVADAFLEKGTIVSIKGRRENTERVYSAKKQNDDVRVPMVVLINAGSASASEIVAGALRDQKRAL
IMGERSFGKGSVQNIIPLSDGSGLKLTVALYYTPNGSSIQAEGIVPDLEIPFEAPRSDDKDNPRLLLREQDLNRHLETKN
DKKAPKGKNTANDAQEQLARDNQLRMGLQMVKSLPKMSEIKAQ

Sequences:

>Translated_443_residues
MRLLFRSHMFAFLLLIGVAAAFPGVSYGADAKEPAKEAPNKFDALKRFSQVLDLVERYYVRDVTQGDLINGAVKGMLQGL
DPHSTFMSTDEYKEMQETTSGEFFGVGIEISQENGQITVVTPIEDTPAFRAGLQPGDIILSINGQPVQELSLQEVVSRIR
GPKGSEVELVILHNDSKNPQTVRITRDAIPLISVKSKKLEDGYYWIRLTRFSERTTDELKDALKAAAKESKANGGIKGIV
LDLRNNPGGLLDQAVSVADAFLEKGTIVSIKGRRENTERVYSAKKQNDDVRVPMVVLINAGSASASEIVAGALRDQKRAL
IMGERSFGKGSVQNIIPLSDGSGLKLTVALYYTPNGSSIQAEGIVPDLEIPFEAPRSDDKDNPRLLLREQDLNRHLETKN
DKKAPKGKNTANDAQEQLARDNQLRMGLQMVKSLPKMSEIKAQ
>Mature_443_residues
MRLLFRSHMFAFLLLIGVAAAFPGVSYGADAKEPAKEAPNKFDALKRFSQVLDLVERYYVRDVTQGDLINGAVKGMLQGL
DPHSTFMSTDEYKEMQETTSGEFFGVGIEISQENGQITVVTPIEDTPAFRAGLQPGDIILSINGQPVQELSLQEVVSRIR
GPKGSEVELVILHNDSKNPQTVRITRDAIPLISVKSKKLEDGYYWIRLTRFSERTTDELKDALKAAAKESKANGGIKGIV
LDLRNNPGGLLDQAVSVADAFLEKGTIVSIKGRRENTERVYSAKKQNDDVRVPMVVLINAGSASASEIVAGALRDQKRAL
IMGERSFGKGSVQNIIPLSDGSGLKLTVALYYTPNGSSIQAEGIVPDLEIPFEAPRSDDKDNPRLLLREQDLNRHLETKN
DKKAPKGKNTANDAQEQLARDNQLRMGLQMVKSLPKMSEIKAQ

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=371, Percent_Identity=29.3800539083558, Blast_Score=124, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48661; Mature: 48661

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLFRSHMFAFLLLIGVAAAFPGVSYGADAKEPAKEAPNKFDALKRFSQVLDLVERYYV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
RDVTQGDLINGAVKGMLQGLDPHSTFMSTDEYKEMQETTSGEFFGVGIEISQENGQITVV
HCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEE
TPIEDTPAFRAGLQPGDIILSINGQPVQELSLQEVVSRIRGPKGSEVELVILHNDSKNPQ
ECCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
TVRITRDAIPLISVKSKKLEDGYYWIRLTRFSERTTDELKDALKAAAKESKANGGIKGIV
EEEEECCCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
LDLRNNPGGLLDQAVSVADAFLEKGTIVSIKGRRENTERVYSAKKQNDDVRVPMVVLINA
EEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEC
GSASASEIVAGALRDQKRALIMGERSFGKGSVQNIIPLSDGSGLKLTVALYYTPNGSSIQ
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEE
AEGIVPDLEIPFEAPRSDDKDNPRLLLREQDLNRHLETKNDKKAPKGKNTANDAQEQLAR
ECCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
DNQLRMGLQMVKSLPKMSEIKAQ
HHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MRLLFRSHMFAFLLLIGVAAAFPGVSYGADAKEPAKEAPNKFDALKRFSQVLDLVERYYV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
RDVTQGDLINGAVKGMLQGLDPHSTFMSTDEYKEMQETTSGEFFGVGIEISQENGQITVV
HCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEE
TPIEDTPAFRAGLQPGDIILSINGQPVQELSLQEVVSRIRGPKGSEVELVILHNDSKNPQ
ECCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
TVRITRDAIPLISVKSKKLEDGYYWIRLTRFSERTTDELKDALKAAAKESKANGGIKGIV
EEEEECCCCCEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
LDLRNNPGGLLDQAVSVADAFLEKGTIVSIKGRRENTERVYSAKKQNDDVRVPMVVLINA
EEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEC
GSASASEIVAGALRDQKRALIMGERSFGKGSVQNIIPLSDGSGLKLTVALYYTPNGSSIQ
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEE
AEGIVPDLEIPFEAPRSDDKDNPRLLLREQDLNRHLETKNDKKAPKGKNTANDAQEQLAR
ECCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
DNQLRMGLQMVKSLPKMSEIKAQ
HHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]