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The map label for this gene is yvrB [H]

Identifier: 220904070

GI number: 220904070

Start: 932980

End: 933870

Strand: Direct

Name: yvrB [H]

Synonym: Ddes_0796

Alternate gene names: 220904070

Gene position: 932980-933870 (Clockwise)

Preceding gene: 220904068

Following gene: 220904071

Centisome position: 32.47

GC content: 67.12

Gene sequence:

>891_bases
ATGCTGGTTGTAGGGCAGATACGCCTTGCCCGCGTGTGCCTTGCGGCTTTGTGCGGCGGCGCTTTGGCTGTGGCGGGCGT
GGCCTTGCAGGGTGTGTTGCGCAATCCGCTCGCTGATCCTTTTACCTTGGGCATTTCTGCCGGAGCGGCTTGCGGGGCCA
GTGTGGCCATCGCCTTGGGCGGCGTTCTGGCCGCAACCCTGAGCGCCCCTTTGGCGGCCCTGCGGCTGCCACTGCCCGGC
CCTGCGGCCCTTGTGCCCCCTGCGGCCCTTGCCGGAGCGTTGCTGGCCCTTGCCGGGGCATTATGGCTCGGCCGGGGCGA
TGGCGGCTTCAGGCGTGAGAGCGTCATTCTGGCGGGCATTGCTGTGGCAGCTTTTCTGGGGGCGCTGGTGGCCCTGATCA
AGGCGCTCAACGAAGAATCCGTCACGAGCATCGTGTTCTGGATTATGGGGTCTTTTCAAGGGCGCGGGTGGGACAGCCTG
CCATTGCTGCTGCTGACTCTTGTGCCCGGTCTGCTGGCCGTGGGTATGGGCTGGCGGGCGCTGGACGTACTGGCGCTGGG
GGATGAGCAGGCCGCCCAGCTGGGCCTGCATGTGGGCCGGGCGCGCCTGTGGCTGTTGGCCGGTGCAAGCTGCATGACGG
CGGGCTGTGTGGCCGTGGCCGGGGTCATAGGTTTTGTGGGCCTGGTTGTGCCGCATGTGCTGCGTCTTGTTTTGGGCTGC
GGGCATGGCCCTTTGCTGGCCGGAGCATTTTTCGGCGGCGGCGTGCTGCTGGTCTGGGCCGATGTGCTGGCCCGCTGCGT
GCTTGACGGCGGGCAGGAACTGCCTGTGGGGGTGGTAACGGCCCTTGTGGGCGGACCATTTTTTGCCCTTCTGGTGCGGA
GGCGCACATGA

Upstream 100 bases:

>100_bases
GGCCTGTCTGCCCGGCCCTGTTTCGCTATCTGCGGAGCAGGTTTTTCATGCTCTGGCGGCCCAGTTGGGGCTGGTACAGG
AGCCGCAGGACGCCTCCCTC

Downstream 100 bases:

>100_bases
CGCGCCCTCTACCCGTGCAGCCAGCCCCGCCTCATGCTCCGGGCCGTGAGGCGTCCCCGGCTGCGCATGCCGGTGGGCCG
CCCATACTTGAGGCGCGCGC

Product: transport system permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLVVGQIRLARVCLAALCGGALAVAGVALQGVLRNPLADPFTLGISAGAACGASVAIALGGVLAATLSAPLAALRLPLPG
PAALVPPAALAGALLALAGALWLGRGDGGFRRESVILAGIAVAAFLGALVALIKALNEESVTSIVFWIMGSFQGRGWDSL
PLLLLTLVPGLLAVGMGWRALDVLALGDEQAAQLGLHVGRARLWLLAGASCMTAGCVAVAGVIGFVGLVVPHVLRLVLGC
GHGPLLAGAFFGGGVLLVWADVLARCVLDGGQELPVGVVTALVGGPFFALLVRRRT

Sequences:

>Translated_296_residues
MLVVGQIRLARVCLAALCGGALAVAGVALQGVLRNPLADPFTLGISAGAACGASVAIALGGVLAATLSAPLAALRLPLPG
PAALVPPAALAGALLALAGALWLGRGDGGFRRESVILAGIAVAAFLGALVALIKALNEESVTSIVFWIMGSFQGRGWDSL
PLLLLTLVPGLLAVGMGWRALDVLALGDEQAAQLGLHVGRARLWLLAGASCMTAGCVAVAGVIGFVGLVVPHVLRLVLGC
GHGPLLAGAFFGGGVLLVWADVLARCVLDGGQELPVGVVTALVGGPFFALLVRRRT
>Mature_296_residues
MLVVGQIRLARVCLAALCGGALAVAGVALQGVLRNPLADPFTLGISAGAACGASVAIALGGVLAATLSAPLAALRLPLPG
PAALVPPAALAGALLALAGALWLGRGDGGFRRESVILAGIAVAAFLGALVALIKALNEESVTSIVFWIMGSFQGRGWDSL
PLLLLTLVPGLLAVGMGWRALDVLALGDEQAAQLGLHVGRARLWLLAGASCMTAGCVAVAGVIGFVGLVVPHVLRLVLGC
GHGPLLAGAFFGGGVLLVWADVLARCVLDGGQELPVGVVTALVGGPFFALLVRRRT

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=298, Percent_Identity=37.9194630872483, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790741, Length=299, Percent_Identity=36.1204013377926, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788004, Length=294, Percent_Identity=37.4149659863946, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786805, Length=270, Percent_Identity=35.9259259259259, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786804, Length=301, Percent_Identity=32.5581395348837, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786347, Length=297, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 29507; Mature: 29507

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVGQIRLARVCLAALCGGALAVAGVALQGVLRNPLADPFTLGISAGAACGASVAIALG
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHH
GVLAATLSAPLAALRLPLPGPAALVPPAALAGALLALAGALWLGRGDGGFRRESVILAGI
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHH
AVAAFLGALVALIKALNEESVTSIVFWIMGSFQGRGWDSLPLLLLTLVPGLLAVGMGWRA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
LDVLALGDEQAAQLGLHVGRARLWLLAGASCMTAGCVAVAGVIGFVGLVVPHVLRLVLGC
HHHEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GHGPLLAGAFFGGGVLLVWADVLARCVLDGGQELPVGVVTALVGGPFFALLVRRRT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVVGQIRLARVCLAALCGGALAVAGVALQGVLRNPLADPFTLGISAGAACGASVAIALG
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHH
GVLAATLSAPLAALRLPLPGPAALVPPAALAGALLALAGALWLGRGDGGFRRESVILAGI
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHH
AVAAFLGALVALIKALNEESVTSIVFWIMGSFQGRGWDSLPLLLLTLVPGLLAVGMGWRA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
LDVLALGDEQAAQLGLHVGRARLWLLAGASCMTAGCVAVAGVIGFVGLVVPHVLRLVLGC
HHHEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GHGPLLAGAFFGGGVLLVWADVLARCVLDGGQELPVGVVTALVGGPFFALLVRRRT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]