BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome.
Accession	NC_011883
Length	2,873,437

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The map label for this gene is yusV [H]

Identifier: 220904071

GI number: 220904071

Start: 933867

End: 934823

Strand: Direct

Name: yusV [H]

Synonym: Ddes_0797

Alternate gene names: 220904071

Gene position: 933867-934823 (Clockwise)

Preceding gene: 220904070

Following gene: 220904072

Centisome position: 32.5

GC content: 65.73

Gene sequence:

>957_bases
ATGACGCGCCCTCTACCCGTGCAGCCAGCCCCGCCTCATGCTCCGGGCCGTGAGGCGTCCCCGGCTGCGCATGCCGGTGG
GCCGCCCATACTTGAGGCGCGCGCCCTGTGTGCCGGTTACCGGGAACGCCCGGTCTTGCAGGACATCTGTTTTACGGCGC
GGCGTGGTGAATGTGTGGCCCTGCTGGGTCCCAACGGCAGCGGCAAGACTACGTTGTTGCGCTGTCTTTCCGGTGTGTTG
CCGGCTGGGGCAGGAAATGTTTTTTTGCAGGGCAGACCTCTTGCGGGCCTGAAGCCGCGCCAGCGCGCCCGCCTTGCCGC
CGTGGTGCCGCAGGGCGGCCGGTTCCCCCAGGAACTGACAGCACGGCAGATGGTGTTGCTTGGCCGCTATCCACATCTTT
CGTGGCTGGGCAGTTACGGGCGCCGCGACCATGAAGCCGTGGATGCCGCACTGGCAGCCTGCGAAGCAGAATTGCTGGCT
CCCCGCCGTCTGGCGGAGCTTTCGGGCGGCGAACTGCAACGGGTGCTGCTGGCAAGGGCGCTGGCGCAGGAAAGCCCGCT
TCTGCTGCTTGACGAACTTGCCGCCGGGCTGGACATGGCCCGCATGGTGGGGCTTTTCGACTTGCTGGAGCGTCGCCGTG
CTGCCGGAGCCTGTGTACTTATGGCTGTACACGACTGCAATCTGGCTGCCGTGTATGCGACACGCCTGCTGGGCCTCAAG
GCGGGCAGACTGTTTTTTGACGGCCCGGTGGACGCGGTTTTTACAGAGGAGAAGCTCAGTGCTCTTTACGATATCCCTGT
TGATGTGCTGCCGCACCCGCGCTGGGGGCTGCCCCAGGCTCTCCTGGCCCGTGCCCGCGGTCCCCGCAGCAGTCTCGCGG
ACTCTTGCAACGGCGCTGCTTCCTTTGCTGCTGACCCTGACGGTGCATCTGATCCCGGCTCAGGTTTTTGCCGCTGA

Upstream 100 bases:

>100_bases
TGGCCCGCTGCGTGCTTGACGGCGGGCAGGAACTGCCTGTGGGGGTGGTAACGGCCCTTGTGGGCGGACCATTTTTTGCC
CTTCTGGTGCGGAGGCGCAC

Downstream 100 bases:

>100_bases
TACTGCTCAGCCCGCGGCTTTGCAAGCAGAGCCAGCATCCGTACCGCACCAGAAAAACAGCACAACGCCTGCCGATACCG
GCCATAGTGTCGCCAATGGC

Product: ABC transporter-like protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTRPLPVQPAPPHAPGREASPAAHAGGPPILEARALCAGYRERPVLQDICFTARRGECVALLGPNGSGKTTLLRCLSGVL
PAGAGNVFLQGRPLAGLKPRQRARLAAVVPQGGRFPQELTARQMVLLGRYPHLSWLGSYGRRDHEAVDAALAACEAELLA
PRRLAELSGGELQRVLLARALAQESPLLLLDELAAGLDMARMVGLFDLLERRRAAGACVLMAVHDCNLAAVYATRLLGLK
AGRLFFDGPVDAVFTEEKLSALYDIPVDVLPHPRWGLPQALLARARGPRSSLADSCNGAASFAADPDGASDPGSGFCR

Sequences:

>Translated_318_residues
MTRPLPVQPAPPHAPGREASPAAHAGGPPILEARALCAGYRERPVLQDICFTARRGECVALLGPNGSGKTTLLRCLSGVL
PAGAGNVFLQGRPLAGLKPRQRARLAAVVPQGGRFPQELTARQMVLLGRYPHLSWLGSYGRRDHEAVDAALAACEAELLA
PRRLAELSGGELQRVLLARALAQESPLLLLDELAAGLDMARMVGLFDLLERRRAAGACVLMAVHDCNLAAVYATRLLGLK
AGRLFFDGPVDAVFTEEKLSALYDIPVDVLPHPRWGLPQALLARARGPRSSLADSCNGAASFAADPDGASDPGSGFCR
>Mature_317_residues
TRPLPVQPAPPHAPGREASPAAHAGGPPILEARALCAGYRERPVLQDICFTARRGECVALLGPNGSGKTTLLRCLSGVLP
AGAGNVFLQGRPLAGLKPRQRARLAAVVPQGGRFPQELTARQMVLLGRYPHLSWLGSYGRRDHEAVDAALAACEAELLAP
RRLAELSGGELQRVLLARALAQESPLLLLDELAAGLDMARMVGLFDLLERRRAAGACVLMAVHDCNLAAVYATRLLGLKA
GRLFFDGPVDAVFTEEKLSALYDIPVDVLPHPRWGLPQALLARARGPRSSLADSCNGAASFAADPDGASDPGSGFCR

Specific function: Provides the ATPase subunit for at least 2 ABC transporter complexes; YfiYZ/YfhA/YusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable), and FeuABC/YusV involved in import of the catecholate siderop

COG id: COG1120

COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=29.4685990338164, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI105990541, Length=209, Percent_Identity=29.6650717703349, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI116734710, Length=288, Percent_Identity=26.3888888888889, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27881501, Length=207, Percent_Identity=25.1207729468599, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI30795238, Length=207, Percent_Identity=25.1207729468599, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=28.9099526066351, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI45446740, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI47078218, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI21536376, Length=209, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI9665248, Length=206, Percent_Identity=30.0970873786408, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI9955963, Length=167, Percent_Identity=29.940119760479, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1790739, Length=252, Percent_Identity=36.1111111111111, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1786345, Length=232, Percent_Identity=36.6379310344828, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1786803, Length=249, Percent_Identity=32.5301204819277, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1790544, Length=254, Percent_Identity=31.8897637795276, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=32.6086956521739, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1789593, Length=240, Percent_Identity=30.8333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=33.0357142857143, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788165, Length=212, Percent_Identity=32.0754716981132, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=33.6585365853659, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=34.1121495327103, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786253, Length=208, Percent_Identity=32.2115384615385, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=29.4930875576037, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082268, Length=243, Percent_Identity=27.1604938271605, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1789864, Length=199, Percent_Identity=31.6582914572864, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=28.7037037037037, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=31.6017316017316, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=35.4368932038835, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=27.2340425531915, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=25.1121076233184, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=29.8319327731092, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788002, Length=217, Percent_Identity=30.4147465437788, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788897, Length=251, Percent_Identity=28.2868525896414, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=26.5116279069767, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=26.7489711934156, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788506, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788210, Length=229, Percent_Identity=26.6375545851528, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=26.6968325791855, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=27.1111111111111, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=29.5833333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790190, Length=175, Percent_Identity=26.2857142857143, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787164, Length=226, Percent_Identity=34.070796460177, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=26.431718061674, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788472, Length=209, Percent_Identity=22.488038277512, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787182, Length=248, Percent_Identity=27.8225806451613, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786319, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=242, Percent_Identity=29.7520661157025, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=26.4227642276423, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787105, Length=239, Percent_Identity=29.2887029288703, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=28.0172413793103, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI48994943, Length=261, Percent_Identity=24.904214559387, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=193, Percent_Identity=27.4611398963731, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=199, Percent_Identity=27.1356783919598, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=26.7281105990783, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17539902, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24581407, Length=262, Percent_Identity=31.2977099236641, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17136592, Length=224, Percent_Identity=30.3571428571429, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI45552199, Length=239, Percent_Identity=32.2175732217573, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28573571, Length=218, Percent_Identity=29.3577981651376, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28573573, Length=204, Percent_Identity=28.921568627451, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581409, Length=217, Percent_Identity=32.7188940092166, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357907, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19920532, Length=218, Percent_Identity=27.0642201834862, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580930, Length=218, Percent_Identity=27.0642201834862, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=226, Percent_Identity=26.9911504424779, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580555, Length=226, Percent_Identity=26.9911504424779, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85816269, Length=226, Percent_Identity=26.9911504424779, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580553, Length=226, Percent_Identity=26.9911504424779, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726357, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574533, Length=186, Percent_Identity=26.8817204301075, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33631; Mature: 33500

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00618 RECF_2 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLPVQPAPPHAPGREASPAAHAGGPPILEARALCAGYRERPVLQDICFTARRGECVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEE
LLGPNGSGKTTLLRCLSGVLPAGAGNVFLQGRPLAGLKPRQRARLAAVVPQGGRFPQELT
EECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHEEEECCCCCCCHHHHH
ARQMVLLGRYPHLSWLGSYGRRDHEAVDAALAACEAELLAPRRLAELSGGELQRVLLARA
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHH
LAQESPLLLLDELAAGLDMARMVGLFDLLERRRAAGACVLMAVHDCNLAAVYATRLLGLK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
AGRLFFDGPVDAVFTEEKLSALYDIPVDVLPHPRWGLPQALLARARGPRSSLADSCNGAA
CCCEEECCCCCCEECHHHHHHHHCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCC
SFAADPDGASDPGSGFCR
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRPLPVQPAPPHAPGREASPAAHAGGPPILEARALCAGYRERPVLQDICFTARRGECVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEE
LLGPNGSGKTTLLRCLSGVLPAGAGNVFLQGRPLAGLKPRQRARLAAVVPQGGRFPQELT
EECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHEEEECCCCCCCHHHHH
ARQMVLLGRYPHLSWLGSYGRRDHEAVDAALAACEAELLAPRRLAELSGGELQRVLLARA
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHH
LAQESPLLLLDELAAGLDMARMVGLFDLLERRRAAGACVLMAVHDCNLAAVYATRLLGLK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH
AGRLFFDGPVDAVFTEEKLSALYDIPVDVLPHPRWGLPQALLARARGPRSSLADSCNGAA
CCCEEECCCCCCEECHHHHHHHHCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCC
SFAADPDGASDPGSGFCR
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]