| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is tktA [H]
Identifier: 220903758
GI number: 220903758
Start: 588921
End: 590924
Strand: Reverse
Name: tktA [H]
Synonym: Ddes_0480
Alternate gene names: 220903758
Gene position: 590924-588921 (Counterclockwise)
Preceding gene: 220903759
Following gene: 220903757
Centisome position: 20.57
GC content: 62.52
Gene sequence:
>2004_bases ATGCCCACCCGCAGACAGTGCGCCAACGCCATCCGCGCCCTTGCCATGGACGCTATTGAGAAAGCCCGCTCCGGCCACCC CGGTGCGCCCCTCGGCATGGCCGATATGGCCGAAGCCCTCTGGCGGCACGGTTTCAGGCATAATCCTGCCAATCCCCTGT GGTTCAACCGCGACCGCTTTGTACTCTCCAACGGGCATGCGTCCATGCTGCTCTACGCCCTGCTGCACCTCACGGGCTAC GACATCCCCATGGAAGAAATACGCAATTTCCGCCAGTGGGGAGCAAAAACCGCCGGGCATCCCGAATACGAGCCGCATCT GGGTATTGAAATGACCACCGGCCCTCTGGGGCAGGGCATTGCCTCCGCCGTGGGCATGGCCCTGGCCGAGAGCATGCTGG CCGCGCAGTTCAACACTCCCGAGTACAAGGTTGTGGACCACCACACCTACGTTTTTGTGGGCGACGGCTGCCTGATGGAA GGCGTTTCGCATGAGGCCTGTTCCCTTGCGGGAACCTGGGGCCTCGGCAAGCTCATCGCCATGTATGACTCCAACGGTAT TTCCATTGACGGCAAGATCGACGGCTGGTTCAACGAAGACGTGGCCGCCCGCTACCGCGCCTACAACTGGCAGGTCATCG GCCCTGTTGACGGGCATGACGCCGCCGCTCTGGACAAAGCCCTGGCCGAAGCAAAGGCCGATACGGACCGCCCGAGCCTC ATCATCTGCCGCACCCACATCGGCTTCGCCTCTCCCAAGGCCGATTCGGCCTCCAGCCACGGCTCCCCCCTGGGCGAAGA CGGCGTAGCCGCCACGCGTGATGCCCTTGGCTGGCACGAACCGCCCTTTACCATTCCGCAGGACATCTACAGCGCCTGGA ACGCACGTGTGGCCGGAAAATCTCTGGAAGCGGCATGGGACAATCTTTTTGCCGCCTATGCCGAAGCCCATCCTGAAAAG GCCGCCGAACTGACCCGGCGCATGCGCGGCGAACTGCCCGCAGACTGGGCTGAAATTGCCCGCAACGCCGTTACCGAGGC CGTCAGCCAGGGGGCCGATACGGCTACCCGTGTGGCCTCCAAAACAACCCTGGAATATCTTGTGCCGCGCCTGCCCGAAC TGGCGGGCGGCTCTGCCGACCTCACAGGCTCTGTTGGTACGCTCACAAGCTCGTCGATACATATGGATGTAAAGAATCAC ACCGGCAACTACATTTCCTACGGTGTGCGCGAATTCGGCATGAGTGCCATCATGAACGGCCTGGCCCTGCACGGCGGCTT TATTCCCTATGCAGGAACGTTCCTTGCGTTTGCCGATCAAGCCAAAAACGCCCTGCGTCTGGCTGCCATTATGGGCATCC GCGTCATATGGGTGCTGACGCACGACTCCATCGGCGTGGGTGAAGACGGTCCCACCCACCAGCCTGTGGAACAGCTGGGG ATGCTGCGCCTCATGCCGGGCTTCAACCTCTGGCGCCCCTGCGACACAGTGGAAACCGCCGTGGCCTGGACTTGCGCCCT GGAAGCCGGGCATACGCCTTCGGGCCTCTCCCTTTCGCGCCAGACCCTGCCCTTCTGCCCGCGCAGCGAGGAACAGGTGG CGGCTATTGCCCGTGGCGGCTATGTGCTGCGCGACTGCGAAGGAACCCCCGAGATCATCATCATGGCTACCGGTTCCGAA GTTGCCCTGGCGCTTGGCGCTGCCGAACAGCTTGCCGCTGACGGCCGCAAGGCGCGTGTCGTCTCCATGCCCTGCGCCGA GTTATTTGACGCCCAGAGCGATGAATACAAAGAAAGCGTGCTGCCTTCCGCTGTCCGTGCGCGGCTGGCGATTGAAGCCT CTGCGTCTGACTGGTGGCTCAAGTATGTAGGCCTTGACGGAGCGGTTATCGGCATGGAAGGCTTTGGGGCTTCGGCTCCG GGCAAGGTGGTTTTTGAACGTCTTGGCTTTACCGTAGCCAACACGCTGGAAAAAGCCCGCGCCCTCATGGCCGGAAAACG CTGA
Upstream 100 bases:
>100_bases AAATCTCTGGACGGCCGCGAGCAGCGCCCCGCGCTGCAAAAGGCCGCCCGGCGTCAGACCTTTGCCCTTACTCATCCCAA GCAAAAATAGAGGAATGATC
Downstream 100 bases:
>100_bases CAACACTTCCGCGCGGGCGCTTCTTCAGACGCGCCCGCGCGTATAAAAACATATTGCCTGACATGCCGGCGGCAGGCAGG ATCAGCCTGACTGTTGCGCG
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 667; Mature: 666
Protein sequence:
>667_residues MPTRRQCANAIRALAMDAIEKARSGHPGAPLGMADMAEALWRHGFRHNPANPLWFNRDRFVLSNGHASMLLYALLHLTGY DIPMEEIRNFRQWGAKTAGHPEYEPHLGIEMTTGPLGQGIASAVGMALAESMLAAQFNTPEYKVVDHHTYVFVGDGCLME GVSHEACSLAGTWGLGKLIAMYDSNGISIDGKIDGWFNEDVAARYRAYNWQVIGPVDGHDAAALDKALAEAKADTDRPSL IICRTHIGFASPKADSASSHGSPLGEDGVAATRDALGWHEPPFTIPQDIYSAWNARVAGKSLEAAWDNLFAAYAEAHPEK AAELTRRMRGELPADWAEIARNAVTEAVSQGADTATRVASKTTLEYLVPRLPELAGGSADLTGSVGTLTSSSIHMDVKNH TGNYISYGVREFGMSAIMNGLALHGGFIPYAGTFLAFADQAKNALRLAAIMGIRVIWVLTHDSIGVGEDGPTHQPVEQLG MLRLMPGFNLWRPCDTVETAVAWTCALEAGHTPSGLSLSRQTLPFCPRSEEQVAAIARGGYVLRDCEGTPEIIIMATGSE VALALGAAEQLAADGRKARVVSMPCAELFDAQSDEYKESVLPSAVRARLAIEASASDWWLKYVGLDGAVIGMEGFGASAP GKVVFERLGFTVANTLEKARALMAGKR
Sequences:
>Translated_667_residues MPTRRQCANAIRALAMDAIEKARSGHPGAPLGMADMAEALWRHGFRHNPANPLWFNRDRFVLSNGHASMLLYALLHLTGY DIPMEEIRNFRQWGAKTAGHPEYEPHLGIEMTTGPLGQGIASAVGMALAESMLAAQFNTPEYKVVDHHTYVFVGDGCLME GVSHEACSLAGTWGLGKLIAMYDSNGISIDGKIDGWFNEDVAARYRAYNWQVIGPVDGHDAAALDKALAEAKADTDRPSL IICRTHIGFASPKADSASSHGSPLGEDGVAATRDALGWHEPPFTIPQDIYSAWNARVAGKSLEAAWDNLFAAYAEAHPEK AAELTRRMRGELPADWAEIARNAVTEAVSQGADTATRVASKTTLEYLVPRLPELAGGSADLTGSVGTLTSSSIHMDVKNH TGNYISYGVREFGMSAIMNGLALHGGFIPYAGTFLAFADQAKNALRLAAIMGIRVIWVLTHDSIGVGEDGPTHQPVEQLG MLRLMPGFNLWRPCDTVETAVAWTCALEAGHTPSGLSLSRQTLPFCPRSEEQVAAIARGGYVLRDCEGTPEIIIMATGSE VALALGAAEQLAADGRKARVVSMPCAELFDAQSDEYKESVLPSAVRARLAIEASASDWWLKYVGLDGAVIGMEGFGASAP GKVVFERLGFTVANTLEKARALMAGKR >Mature_666_residues PTRRQCANAIRALAMDAIEKARSGHPGAPLGMADMAEALWRHGFRHNPANPLWFNRDRFVLSNGHASMLLYALLHLTGYD IPMEEIRNFRQWGAKTAGHPEYEPHLGIEMTTGPLGQGIASAVGMALAESMLAAQFNTPEYKVVDHHTYVFVGDGCLMEG VSHEACSLAGTWGLGKLIAMYDSNGISIDGKIDGWFNEDVAARYRAYNWQVIGPVDGHDAAALDKALAEAKADTDRPSLI ICRTHIGFASPKADSASSHGSPLGEDGVAATRDALGWHEPPFTIPQDIYSAWNARVAGKSLEAAWDNLFAAYAEAHPEKA AELTRRMRGELPADWAEIARNAVTEAVSQGADTATRVASKTTLEYLVPRLPELAGGSADLTGSVGTLTSSSIHMDVKNHT GNYISYGVREFGMSAIMNGLALHGGFIPYAGTFLAFADQAKNALRLAAIMGIRVIWVLTHDSIGVGEDGPTHQPVEQLGM LRLMPGFNLWRPCDTVETAVAWTCALEAGHTPSGLSLSRQTLPFCPRSEEQVAAIARGGYVLRDCEGTPEIIIMATGSEV ALALGAAEQLAADGRKARVVSMPCAELFDAQSDEYKESVLPSAVRARLAIEASASDWWLKYVGLDGAVIGMEGFGASAPG KVVFERLGFTVANTLEKARALMAGKR
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=582, Percent_Identity=26.4604810996564, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI4507521, Length=582, Percent_Identity=26.4604810996564, Blast_Score=160, Evalue=5e-39, Organism=Homo sapiens, GI133778974, Length=586, Percent_Identity=25.0853242320819, Blast_Score=131, Evalue=3e-30, Organism=Escherichia coli, GI48994911, Length=664, Percent_Identity=59.1867469879518, Blast_Score=833, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=665, Percent_Identity=58.4962406015038, Blast_Score=820, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=581, Percent_Identity=25.9896729776248, Blast_Score=158, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6325331, Length=673, Percent_Identity=47.8454680534918, Blast_Score=592, Evalue=1e-170, Organism=Saccharomyces cerevisiae, GI6319593, Length=677, Percent_Identity=44.7562776957164, Blast_Score=546, Evalue=1e-156, Organism=Drosophila melanogaster, GI45551847, Length=599, Percent_Identity=25.8764607679466, Blast_Score=166, Evalue=5e-41, Organism=Drosophila melanogaster, GI45550715, Length=599, Percent_Identity=25.8764607679466, Blast_Score=166, Evalue=5e-41, Organism=Drosophila melanogaster, GI24666278, Length=586, Percent_Identity=25.938566552901, Blast_Score=149, Evalue=5e-36, Organism=Drosophila melanogaster, GI24645119, Length=565, Percent_Identity=26.0176991150442, Blast_Score=148, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 71528; Mature: 71397
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2 ; PS01346 CLAUDIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRRQCANAIRALAMDAIEKARSGHPGAPLGMADMAEALWRHGFRHNPANPLWFNRDRF CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCEE VLSNGHASMLLYALLHLTGYDIPMEEIRNFRQWGAKTAGHPEYEPHLGIEMTTGPLGQGI EEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHH ASAVGMALAESMLAAQFNTPEYKVVDHHTYVFVGDGCLMEGVSHEACSLAGTWGLGKLIA HHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCHHHCCCCCHHHHHCCCCCHHHEEE MYDSNGISIDGKIDGWFNEDVAARYRAYNWQVIGPVDGHDAAALDKALAEAKADTDRPSL EECCCCEEECCEECCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCE IICRTHIGFASPKADSASSHGSPLGEDGVAATRDALGWHEPPFTIPQDIYSAWNARVAGK EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHCCC SLEAAWDNLFAAYAEAHPEKAAELTRRMRGELPADWAEIARNAVTEAVSQGADTATRVAS HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH KTTLEYLVPRLPELAGGSADLTGSVGTLTSSSIHMDVKNHTGNYISYGVREFGMSAIMNG HHHHHHHHHCCHHHCCCCCCCCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHH LALHGGFIPYAGTFLAFADQAKNALRLAAIMGIRVIWVLTHDSIGVGEDGPTHQPVEQLG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCHHHHC MLRLMPGFNLWRPCDTVETAVAWTCALEAGHTPSGLSLSRQTLPFCPRSEEQVAAIARGG CEEECCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC YVLRDCEGTPEIIIMATGSEVALALGAAEQLAADGRKARVVSMPCAELFDAQSDEYKESV EEEEECCCCCCEEEEECCCCEEEECCCHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH LPSAVRARLAIEASASDWWLKYVGLDGAVIGMEGFGASAPGKVVFERLGFTVANTLEKAR CCHHHHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHH ALMAGKR HHHCCCC >Mature Secondary Structure PTRRQCANAIRALAMDAIEKARSGHPGAPLGMADMAEALWRHGFRHNPANPLWFNRDRF CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCEE VLSNGHASMLLYALLHLTGYDIPMEEIRNFRQWGAKTAGHPEYEPHLGIEMTTGPLGQGI EEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHH ASAVGMALAESMLAAQFNTPEYKVVDHHTYVFVGDGCLMEGVSHEACSLAGTWGLGKLIA HHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCHHHCCCCCHHHHHCCCCCHHHEEE MYDSNGISIDGKIDGWFNEDVAARYRAYNWQVIGPVDGHDAAALDKALAEAKADTDRPSL EECCCCEEECCEECCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCE IICRTHIGFASPKADSASSHGSPLGEDGVAATRDALGWHEPPFTIPQDIYSAWNARVAGK EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHCCC SLEAAWDNLFAAYAEAHPEKAAELTRRMRGELPADWAEIARNAVTEAVSQGADTATRVAS HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH KTTLEYLVPRLPELAGGSADLTGSVGTLTSSSIHMDVKNHTGNYISYGVREFGMSAIMNG HHHHHHHHHCCHHHCCCCCCCCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHH LALHGGFIPYAGTFLAFADQAKNALRLAAIMGIRVIWVLTHDSIGVGEDGPTHQPVEQLG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCHHHHC MLRLMPGFNLWRPCDTVETAVAWTCALEAGHTPSGLSLSRQTLPFCPRSEEQVAAIARGG CEEECCCCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC YVLRDCEGTPEIIIMATGSEVALALGAAEQLAADGRKARVVSMPCAELFDAQSDEYKESV EEEEECCCCCCEEEEECCCCEEEECCCHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH LPSAVRARLAIEASASDWWLKYVGLDGAVIGMEGFGASAPGKVVFERLGFTVANTLEKAR CCHHHHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHH ALMAGKR HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8241274; 9278503; 2153656 [H]