| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220903383
Identifier: 220903383
GI number: 220903383
Start: 123760
End: 126228
Strand: Direct
Name: 220903383
Synonym: Ddes_0097
Alternate gene names: NA
Gene position: 123760-126228 (Clockwise)
Preceding gene: 220903382
Following gene: 220903384
Centisome position: 4.31
GC content: 61.93
Gene sequence:
>2469_bases ATGGCTGTCCGGCGTTTTGCCGTTTTTCTTTTTTCTCTTTGCGCCCTGCGGGCCTTGCCGGGTCTTGCAGCGGCGCTTTT GTGCGTTCTTGCCGCGTCCGGATACGCGCGCGCCGATAACTGGCAGGCTTCGCTATATAACGAGGGCCTGCCTTCCCATC TGGTGGCTGTGGATAAAAACCGCCAGACCTTCATGTTTTTCGAGAAAAAAAGCCCTCTCAAGCTCCGCTATACCTACCCC TGCACCACCGGACAGCTGACCGGCGACAAGAAGGTGCTCAACGACCTGCGCACTCCCGAGGGTGTCTACTTTGTGGAGTA CAAGATCGCCAGCGGGCTGGATTTCAAAGAATACGGGGGCATAGCTTACACGCTCAACTATCCTAACCCCGTGGACAAAC TGCGTGGCAAAACCGGCCACGGCATATGGATTCACAGCAAGGGCCTGGGCATTGAGCCGCTTTCAACACGGGGCTGCGTG GCTATCGGGCTGAAAGAAATTGACGAGGTTGGCCCGAGCCTTGTACCCGGAACCGCCGTGGTGCTGGCGGAACGTCTGGA TGAAACCACCGTGCCGCAGCCGGATAACGGCACGGCCCGTGAATTGCGGCGGCTCATGCAGGCATGGAGCAATGCCTGGG CCGGGCGCTCATCCAGGATGTTTGAATTTTATGATGCCGATGCGTACAGCAAGGCCATGCCCGAAAGCTTCGCCGCTTTC AGGCTGAACAAGGAACGTCTGTTCAAGATCCTCAGTTTTATCAAGATTTACAACCGTAAAATTCACGTGCTTGAGGGGCC GGGCTATTGGGTTACCTGGTCCGAGCAGTTTTATACCGCATCCAATCTTTCCACTGAAGGTGTCCGTCGTCTGTACTGGC AGCGCGGTGACGACAAGAAGTTCCGCATTGTCGGTATGGAATGGAGCCCCCGTGATCTTGGTATGCGGGCTGCTTACCAG AAAGGCCAGCTTGTGGCCGAAGCGCCGTTGCAGACGGCTTCGGACGCTGACTCCGAGGCGCCCCTGCCGCCGCGTCTGGA TATGCCTGAGAGCGCCGCTGACGGCACGGAAGTTGTAACCGCCAGCGCCGCCGATGGGAGCAAGGCAGGCGGCAAGACGT CTGCTGAAGCCGCTGCGCCGGGTAAATCCGTTGCACTCAGCGAGCCTCTTGTTCCCCGTCGCATGCAGGCCCCGCCCCCG GCGGAAGTGAACTGGGGCGCGCGCCCCGCCATGGAAGATTCAGCCAGGGTTGCCGCCGAGCAGCGGGCCGCCGAAGAACT TGCTGCCCGGCAGCGTGCGGAAGAAGAGCGCGCCGCAGCGCAGCGCCTTGCCGAAATCCGTGCTGCGGAAGAACGCGCGG CTGCCGTAAAAGCCGAGGCCGAGCGCTTGGCCGCTGAGCAGGCCGCTGCTGAAAAAGCCGCTGCCGAAGCTGAAGCGCAA CGCTTGGCGCAACTTGCCGCAGAAAAGCTTGCTGCGGAACGCGCAGCGGCAAAGGCCGAAGCCGAACGTCTGGCTGCCGA AAAAGCCGCTGCTGAAAAGGCCGCCGCTGAAGCCGAGGAGCAACGCCTGGCGCGATCGGCCGCAGAAAAACTTGCTGCGG AAAAACTGGTTGCGGAGCAGCTTGCTGCCCAGCGCGCCGCCGAGGAACTGGAAGCCAAAAAGCAGGCAGCCCTTGCCGCG CAGGATCTGCGCCTTACTCCGGAGCTGCGCACCCAGTTGCAACAGGCTGTGAGCGGCTGGAATGCGGCCCTTGCCGCCCG TTCGCCGGCTCTTGCCGACTTTTACGATCATGCGCGCTTCAACCGTGAACCCGGGGCGCCACGCGGCCTTTCCTATAATG CCGCATGGCGTGAGCTTGAAAAGCATCTGGGCGCGCCCTGGCTGCGTTACATCAGCCGCAAACCTTCTTTCGAGGTGCAG GGCAAGTTGGCGGTTAGCCGCTGCGAAGAGCTTGTGGCCGGTCCTCACGGTTTGAGCGAGGGCGTACGCACGCTATGGTG GCGCAAGGGCGACAACGGCGACCTGCGTATTGTGGCCTCGCAGTTCCAGCCCGATGAGCTGGGCCTGGCCGCCGACTATC TGGATCAGGTAAGCGGCGCGGTAAGCGATGCCATTGAAGGCTGGCGCAAGGCCTGGGAAGCGGGCAACCTGGATGCCTAT ATGGCCTACTATACCGACAGCGCCGTGCAGCAGGGCCGCTGGGGGGCCAAAAATATCCGCCGTCAGAAAGAAGGGCTGTG GTCCCGTGTGCAGCCGACCCTTGTGCAGCTTTCCGGCTTGCGGCTGGTGGCGGACAAGGCCGGCATACGCGCCGATATGG GGCAGACCTATGCCGACAGCGCCGGGCACAGCGACAGGGGAACAAAAACCCTGCTCCTGCAGTATGACGGCAAGAAATGG CTTATCACGCGTGAAGACTGGACGGCGGCTCCCGCCGCTGCCCCTGCGCCCGGAGGAGGCAGGCCTTGA
Upstream 100 bases:
>100_bases GCCGTACGCGGACGGGCGCACGCCCGTCCGGCACATCATGACGCGCTTTTCCACCACGGCTCCCACGACCCGTCAGGGGG GGCGCGTCTTGTGCCGCAGC
Downstream 100 bases:
>100_bases AATACAAGGAAAGCCTTTCCATCATCTTTATGAGGGATAACGGTCCCCGGCGCAGTTTTCGTGTTTGCCGGGGCCGCTTT TACGCGGCGCTGGTCTTTTT
Product: ErfK/YbiS/YcfS/YnhG family protein
Products: NA
Alternate protein names: ErfK/YbiS/YcfS/YnhG; Erfk/Ybis/Ycfs/Ynhg Family Protein; Periplasmic Protein; TPR Repeat-Containing Protein; ErfK Family Protein
Number of amino acids: Translated: 822; Mature: 821
Protein sequence:
>822_residues MAVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQASLYNEGLPSHLVAVDKNRQTFMFFEKKSPLKLRYTYP CTTGQLTGDKKVLNDLRTPEGVYFVEYKIASGLDFKEYGGIAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCV AIGLKEIDEVGPSLVPGTAVVLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSSRMFEFYDADAYSKAMPESFAAF RLNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQFYTASNLSTEGVRRLYWQRGDDKKFRIVGMEWSPRDLGMRAAYQ KGQLVAEAPLQTASDADSEAPLPPRLDMPESAADGTEVVTASAADGSKAGGKTSAEAAAPGKSVALSEPLVPRRMQAPPP AEVNWGARPAMEDSARVAAEQRAAEELAARQRAEEERAAAQRLAEIRAAEERAAAVKAEAERLAAEQAAAEKAAAEAEAQ RLAQLAAEKLAAERAAAKAEAERLAAEKAAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQLAAQRAAEELEAKKQAALAA QDLRLTPELRTQLQQAVSGWNAALAARSPALADFYDHARFNREPGAPRGLSYNAAWRELEKHLGAPWLRYISRKPSFEVQ GKLAVSRCEELVAGPHGLSEGVRTLWWRKGDNGDLRIVASQFQPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAY MAYYTDSAVQQGRWGAKNIRRQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADSAGHSDRGTKTLLLQYDGKKW LITREDWTAAPAAAPAPGGGRP
Sequences:
>Translated_822_residues MAVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQASLYNEGLPSHLVAVDKNRQTFMFFEKKSPLKLRYTYP CTTGQLTGDKKVLNDLRTPEGVYFVEYKIASGLDFKEYGGIAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCV AIGLKEIDEVGPSLVPGTAVVLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSSRMFEFYDADAYSKAMPESFAAF RLNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQFYTASNLSTEGVRRLYWQRGDDKKFRIVGMEWSPRDLGMRAAYQ KGQLVAEAPLQTASDADSEAPLPPRLDMPESAADGTEVVTASAADGSKAGGKTSAEAAAPGKSVALSEPLVPRRMQAPPP AEVNWGARPAMEDSARVAAEQRAAEELAARQRAEEERAAAQRLAEIRAAEERAAAVKAEAERLAAEQAAAEKAAAEAEAQ RLAQLAAEKLAAERAAAKAEAERLAAEKAAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQLAAQRAAEELEAKKQAALAA QDLRLTPELRTQLQQAVSGWNAALAARSPALADFYDHARFNREPGAPRGLSYNAAWRELEKHLGAPWLRYISRKPSFEVQ GKLAVSRCEELVAGPHGLSEGVRTLWWRKGDNGDLRIVASQFQPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAY MAYYTDSAVQQGRWGAKNIRRQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADSAGHSDRGTKTLLLQYDGKKW LITREDWTAAPAAAPAPGGGRP >Mature_821_residues AVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQASLYNEGLPSHLVAVDKNRQTFMFFEKKSPLKLRYTYPC TTGQLTGDKKVLNDLRTPEGVYFVEYKIASGLDFKEYGGIAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCVA IGLKEIDEVGPSLVPGTAVVLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSSRMFEFYDADAYSKAMPESFAAFR LNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQFYTASNLSTEGVRRLYWQRGDDKKFRIVGMEWSPRDLGMRAAYQK GQLVAEAPLQTASDADSEAPLPPRLDMPESAADGTEVVTASAADGSKAGGKTSAEAAAPGKSVALSEPLVPRRMQAPPPA EVNWGARPAMEDSARVAAEQRAAEELAARQRAEEERAAAQRLAEIRAAEERAAAVKAEAERLAAEQAAAEKAAAEAEAQR LAQLAAEKLAAERAAAKAEAERLAAEKAAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQLAAQRAAEELEAKKQAALAAQ DLRLTPELRTQLQQAVSGWNAALAARSPALADFYDHARFNREPGAPRGLSYNAAWRELEKHLGAPWLRYISRKPSFEVQG KLAVSRCEELVAGPHGLSEGVRTLWWRKGDNGDLRIVASQFQPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAYM AYYTDSAVQQGRWGAKNIRRQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADSAGHSDRGTKTLLLQYDGKKWL ITREDWTAAPAAAPAPGGGRP
Specific function: Unknown
COG id: COG3034
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89722; Mature: 89591
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQASLYNEGLPSHLVAVDKN CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEEECCC RQTFMFFEKKSPLKLRYTYPCTTGQLTGDKKVLNDLRTPEGVYFVEYKIASGLDFKEYGG CCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHCC IAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCVAIGLKEIDEVGPSLVPGTAV EEEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECHHHHHHCCCCCCCCHHH VLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSSRMFEFYDADAYSKAMPESFAAF HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCHHHHHH RLNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQFYTASNLSTEGVRRLYWQRGDDKK HCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCE FRIVGMEWSPRDLGMRAAYQKGQLVAEAPLQTASDADSEAPLPPRLDMPESAADGTEVVT EEEEECCCCCHHHCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ASAADGSKAGGKTSAEAAAPGKSVALSEPLVPRRMQAPPPAEVNWGARPAMEDSARVAAE EECCCCCCCCCCCCCHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH QRAAEELAARQRAEEERAAAQRLAEIRAAEERAAAVKAEAERLAAEQAAAEKAAAEAEAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLAQLAAEKLAAERAAAKAEAERLAAEKAAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAQRAAEELEAKKQAALAAQDLRLTPELRTQLQQAVSGWNAALAARSPALADFYDHARF HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHC NREPGAPRGLSYNAAWRELEKHLGAPWLRYISRKPSFEVQGKLAVSRCEELVAGPHGLSE CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHH GVRTLWWRKGDNGDLRIVASQFQPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAY HHHHHHEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE MAYYTDSAVQQGRWGAKNIRRQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADS EEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEEEEHHCCCHHHCCCHHHCC AGHSDRGTKTLLLQYDGKKWLITREDWTAAPAAAPAPGGGRP CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AVRRFAVFLFSLCALRALPGLAAALLCVLAASGYARADNWQASLYNEGLPSHLVAVDKN CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEEECCC RQTFMFFEKKSPLKLRYTYPCTTGQLTGDKKVLNDLRTPEGVYFVEYKIASGLDFKEYGG CCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHCC IAYTLNYPNPVDKLRGKTGHGIWIHSKGLGIEPLSTRGCVAIGLKEIDEVGPSLVPGTAV EEEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECHHHHHHCCCCCCCCHHH VLAERLDETTVPQPDNGTARELRRLMQAWSNAWAGRSSRMFEFYDADAYSKAMPESFAAF HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCHHHHHH RLNKERLFKILSFIKIYNRKIHVLEGPGYWVTWSEQFYTASNLSTEGVRRLYWQRGDDKK HCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHCCCCCE FRIVGMEWSPRDLGMRAAYQKGQLVAEAPLQTASDADSEAPLPPRLDMPESAADGTEVVT EEEEECCCCCHHHCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ASAADGSKAGGKTSAEAAAPGKSVALSEPLVPRRMQAPPPAEVNWGARPAMEDSARVAAE EECCCCCCCCCCCCCHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH QRAAEELAARQRAEEERAAAQRLAEIRAAEERAAAVKAEAERLAAEQAAAEKAAAEAEAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLAQLAAEKLAAERAAAKAEAERLAAEKAAAEKAAAEAEEQRLARSAAEKLAAEKLVAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAQRAAEELEAKKQAALAAQDLRLTPELRTQLQQAVSGWNAALAARSPALADFYDHARF HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHC NREPGAPRGLSYNAAWRELEKHLGAPWLRYISRKPSFEVQGKLAVSRCEELVAGPHGLSE CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHH GVRTLWWRKGDNGDLRIVASQFQPDELGLAADYLDQVSGAVSDAIEGWRKAWEAGNLDAY HHHHHHEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE MAYYTDSAVQQGRWGAKNIRRQKEGLWSRVQPTLVQLSGLRLVADKAGIRADMGQTYADS EEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEEEEHHCCCHHHCCCHHHCC AGHSDRGTKTLLLQYDGKKWLITREDWTAAPAAAPAPGGGRP CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA