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The map label for this gene is sufB [C]

Identifier: 218883463

GI number: 218883463

Start: 135009

End: 136232

Strand: Reverse

Name: sufB [C]

Synonym: DKAM_0149

Alternate gene names: 218883463

Gene position: 136232-135009 (Counterclockwise)

Preceding gene: 218883464

Following gene: 218883460

Centisome position: 9.98

GC content: 46.98

Gene sequence:

>1224_bases
ATGGTTAAATATAGTCTTGAGGAAGTTGAGAAAGCACTATATAAGCCATCCACTTACGGTCCCGACGTAGATTTAGGACT
ATATACTAGTGACTCAGCGAAGACGACTGAAATCAGTGGCAGAGACGAAATTCCCGTTGAAGCCAGGAAGGCTGGTGAGA
GATTCGGTATAAACGTTGAATCAGCGATGTATATACAGGTTGATGAGTCAGCACTATACCGCTCACTTGAGAAGGCCCTT
GGAAAATACGGTGTGAAAATAATGCCTACAAGGCTAGCTCTTGAGAAGACTGATCTAGGGAGGGAGGTTTCATGGAGGCT
CATAGATCCACGTAGCGACAAGTATACGGCATCAGCCTTTCTTCATGGCGGTGAGGTAGGGTACTTTATCTATGTTCCGA
GAGGGGTTAGGGTACCGGTTCCCATATATACCTGCCTAGCCATAACTAGTAACCGTAGAATACAGTACGCGCATAATATA
GTATTCGTGGACGAGGGCGCCGAAGCCCATGTGGTAACAGGATGCGCCGTACCCCACGGGGTAAGGGAAGGCGTCCATAT
AGGTATTTCAGAGTTCTATGTCTCCAGGAACGCGAGGCTTACATTTACAATGATGCATGCATGGGCCGAAGGCATGCATA
TAAGGCCTCGTACAGCCGTGAGAGTTGAAGAGGGGGGTGAGTACGTTAGCTATTATATCATATATAGCCCGGTGGCGAGC
CTGCAAACGTATCCAAGGGTAGAATTATCCACAGGAGCGAGAGCATACCTTGCATCAATCATAGCTGGCAGTGGCAATGG
GATATATGATCAGGGTTCAGCCGCTATTCTACAGGGTAAGAATAGTTCAGCCGAAGTGGTTTCACGTGCCGTGGCCGGTG
GGTATTCAGAAATATATGCCAGGGGCAGCATTGAGGCATTCGAGGCAGAGAGTAAGGGACATATAGAGTGTCTTGGATTA
CTTATCTCGGAGAACGCGTTAATATCCTCAATACCCATGATAACATCAAGGAAGCCAGGGGCTATTTTAACCCATGAAGC
AGCCATAGGCATGATAGCTGAGAAGGAGATACAGTACTTGATGAGCAAGGGGTTCACTGAGGATGAGGCTAAATCAGTTC
TTGTCAAAGGCTTCATGAGTATAAAGGCACCGGGTATACCATTAACTGTGGAGAGAGAAGTTGAAAGACTACTAGATATA
ATTACGAGGAGTGCTCTTGGCTGA

Upstream 100 bases:

>100_bases
GACGGTAGTATAGCCTACAGTGGCTCACCAGATGAAGTGCTCCCTGTAGTCTTCAAGTTCGGGTATAGGCGTGGAGTAGA
AATTCTGAAGGGCGGTAAGA

Downstream 100 bases:

>100_bases
GAGTTACCACCTTGTCTCCTTCACTCCAAGCATGTAGGCGATATTGTTCGCCGCCACATGTAGGATGAATATTAACGCGA
GCGTTGATAGCACGTAGTCG

Product: SufBD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MVKYSLEEVEKALYKPSTYGPDVDLGLYTSDSAKTTEISGRDEIPVEARKAGERFGINVESAMYIQVDESALYRSLEKAL
GKYGVKIMPTRLALEKTDLGREVSWRLIDPRSDKYTASAFLHGGEVGYFIYVPRGVRVPVPIYTCLAITSNRRIQYAHNI
VFVDEGAEAHVVTGCAVPHGVREGVHIGISEFYVSRNARLTFTMMHAWAEGMHIRPRTAVRVEEGGEYVSYYIIYSPVAS
LQTYPRVELSTGARAYLASIIAGSGNGIYDQGSAAILQGKNSSAEVVSRAVAGGYSEIYARGSIEAFEAESKGHIECLGL
LISENALISSIPMITSRKPGAILTHEAAIGMIAEKEIQYLMSKGFTEDEAKSVLVKGFMSIKAPGIPLTVEREVERLLDI
ITRSALG

Sequences:

>Translated_407_residues
MVKYSLEEVEKALYKPSTYGPDVDLGLYTSDSAKTTEISGRDEIPVEARKAGERFGINVESAMYIQVDESALYRSLEKAL
GKYGVKIMPTRLALEKTDLGREVSWRLIDPRSDKYTASAFLHGGEVGYFIYVPRGVRVPVPIYTCLAITSNRRIQYAHNI
VFVDEGAEAHVVTGCAVPHGVREGVHIGISEFYVSRNARLTFTMMHAWAEGMHIRPRTAVRVEEGGEYVSYYIIYSPVAS
LQTYPRVELSTGARAYLASIIAGSGNGIYDQGSAAILQGKNSSAEVVSRAVAGGYSEIYARGSIEAFEAESKGHIECLGL
LISENALISSIPMITSRKPGAILTHEAAIGMIAEKEIQYLMSKGFTEDEAKSVLVKGFMSIKAPGIPLTVEREVERLLDI
ITRSALG
>Mature_407_residues
MVKYSLEEVEKALYKPSTYGPDVDLGLYTSDSAKTTEISGRDEIPVEARKAGERFGINVESAMYIQVDESALYRSLEKAL
GKYGVKIMPTRLALEKTDLGREVSWRLIDPRSDKYTASAFLHGGEVGYFIYVPRGVRVPVPIYTCLAITSNRRIQYAHNI
VFVDEGAEAHVVTGCAVPHGVREGVHIGISEFYVSRNARLTFTMMHAWAEGMHIRPRTAVRVEEGGEYVSYYIIYSPVAS
LQTYPRVELSTGARAYLASIIAGSGNGIYDQGSAAILQGKNSSAEVVSRAVAGGYSEIYARGSIEAFEAESKGHIECLGL
LISENALISSIPMITSRKPGAILTHEAAIGMIAEKEIQYLMSKGFTEDEAKSVLVKGFMSIKAPGIPLTVEREVERLLDI
ITRSALG

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=309, Percent_Identity=26.537216828479, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 44509; Mature: 44509

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKYSLEEVEKALYKPSTYGPDVDLGLYTSDSAKTTEISGRDEIPVEARKAGERFGINVE
CCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
SAMYIQVDESALYRSLEKALGKYGVKIMPTRLALEKTDLGREVSWRLIDPRSDKYTASAF
CEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEE
LHGGEVGYFIYVPRGVRVPVPIYTCLAITSNRRIQYAHNIVFVDEGAEAHVVTGCAVPHG
EECCCEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCC
VREGVHIGISEFYVSRNARLTFTMMHAWAEGMHIRPRTAVRVEEGGEYVSYYIIYSPVAS
CCCCEEECHHHHEECCCCEEEEEEEEHHHCCCEECCCEEEEEECCCCEEEEEEEECCHHH
LQTYPRVELSTGARAYLASIIAGSGNGIYDQGSAAILQGKNSSAEVVSRAVAGGYSEIYA
HHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHEE
RGSIEAFEAESKGHIECLGLLISENALISSIPMITSRKPGAILTHEAAIGMIAEKEIQYL
CCCCEEEECCCCCCEEEEEEEEECCCHHHCCCCEECCCCCEEEEEHHHHHHHHHHHHHHH
MSKGFTEDEAKSVLVKGFMSIKAPGIPLTVEREVERLLDIITRSALG
HHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKYSLEEVEKALYKPSTYGPDVDLGLYTSDSAKTTEISGRDEIPVEARKAGERFGINVE
CCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
SAMYIQVDESALYRSLEKALGKYGVKIMPTRLALEKTDLGREVSWRLIDPRSDKYTASAF
CEEEEEECHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEE
LHGGEVGYFIYVPRGVRVPVPIYTCLAITSNRRIQYAHNIVFVDEGAEAHVVTGCAVPHG
EECCCEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCC
VREGVHIGISEFYVSRNARLTFTMMHAWAEGMHIRPRTAVRVEEGGEYVSYYIIYSPVAS
CCCCEEECHHHHEECCCCEEEEEEEEHHHCCCEECCCEEEEEECCCCEEEEEEEECCHHH
LQTYPRVELSTGARAYLASIIAGSGNGIYDQGSAAILQGKNSSAEVVSRAVAGGYSEIYA
HHCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHEE
RGSIEAFEAESKGHIECLGLLISENALISSIPMITSRKPGAILTHEAAIGMIAEKEIQYL
CCCCEEEECCCCCCEEEEEEEEECCCHHHCCCCEECCCCCEEEEEHHHHHHHHHHHHHHH
MSKGFTEDEAKSVLVKGFMSIKAPGIPLTVEREVERLLDIITRSALG
HHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]