BacMap

Definition	Desulfurococcus kamchatkensis 1221n chromosome, complete genome.
Accession	NC_011766
Length	1,365,223

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The map label for this gene is sufC [C]

Identifier: 218883464

GI number: 218883464

Start: 136225

End: 136956

Strand: Reverse

Name: sufC [C]

Synonym: DKAM_0150

Alternate gene names: 218883464

Gene position: 136956-136225 (Counterclockwise)

Preceding gene: 218883465

Following gene: 218883463

Centisome position: 10.03

GC content: 45.63

Gene sequence:

>732_bases
ATGAGCCTGGAGGTACAGGGGCTTTCAGTGGCTGTAGACGATAGGATAGTACTTAGAGACATCTCATTAACAATTCCGCA
GGGTGAGCTGCATATCATAATGGGCCCTAATGGCAGTGGGAAATCAACTCTCCTGGCATCATTAATGGGGCTACCCTACT
TGAAAATTATTTCCGGTAGGATATACTTTGATGGAAGAGATATCACCAAGCTACCCCCGTATGAGAGGGCCAAGCTAGGT
ATCGCTTTAGCACATCAGAACCCTCCAGAGGTCAAGGGAGTTAAGTTAAGGGAGATAGCGAGGTTCATGCTCGAGAAATA
TAGATGCGATGACTCAGCCATGTTTTCAAAGCTACTTAAAATAGATCCTTTACTGGATAGAGATCTCTTCCTTGGGTTCA
GTGGAGGCGAGAAGAAGAGGGCTGAACTCTTTCTTTCACTACTGCAGTCGCCTAGGCTAGCTATGCTGGACGAACCCGAC
AGCGGTGTTGATGTGGAGAGTGCTGAGATCATTGCCCATGCAATAGAATTATTGATCCATAAGAAGAGCTCAGTTATACT
TGTAACCCATACGGGCTTGATAACCAATAAGCTGAACAGAATAGACGGGGTCCATTTATTAATAGACGGTAGTATAGCCT
ACAGTGGCTCACCAGATGAAGTGCTCCCTGTAGTCTTCAAGTTCGGGTATAGGCGTGGAGTAGAAATTCTGAAGGGCGGT
AAGAATGGTTAA

Upstream 100 bases:

>100_bases
TCCACGAGCTCGTTAAGGAGAGGTTATCCAGTTCTAACATGGATACGTGGAATACCATTAATTAAGTAGGATCATGTATT
TAGAGATATAGGGATCGACT

Downstream 100 bases:

>100_bases
ATATAGTCTTGAGGAAGTTGAGAAAGCACTATATAAGCCATCCACTTACGGTCCCGACGTAGATTTAGGACTATATACTA
GTGACTCAGCGAAGACGACT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSLEVQGLSVAVDDRIVLRDISLTIPQGELHIIMGPNGSGKSTLLASLMGLPYLKIISGRIYFDGRDITKLPPYERAKLG
IALAHQNPPEVKGVKLREIARFMLEKYRCDDSAMFSKLLKIDPLLDRDLFLGFSGGEKKRAELFLSLLQSPRLAMLDEPD
SGVDVESAEIIAHAIELLIHKKSSVILVTHTGLITNKLNRIDGVHLLIDGSIAYSGSPDEVLPVVFKFGYRRGVEILKGG
KNG

Sequences:

>Translated_243_residues
MSLEVQGLSVAVDDRIVLRDISLTIPQGELHIIMGPNGSGKSTLLASLMGLPYLKIISGRIYFDGRDITKLPPYERAKLG
IALAHQNPPEVKGVKLREIARFMLEKYRCDDSAMFSKLLKIDPLLDRDLFLGFSGGEKKRAELFLSLLQSPRLAMLDEPD
SGVDVESAEIIAHAIELLIHKKSSVILVTHTGLITNKLNRIDGVHLLIDGSIAYSGSPDEVLPVVFKFGYRRGVEILKGG
KNG
>Mature_242_residues
SLEVQGLSVAVDDRIVLRDISLTIPQGELHIIMGPNGSGKSTLLASLMGLPYLKIISGRIYFDGRDITKLPPYERAKLGI
ALAHQNPPEVKGVKLREIARFMLEKYRCDDSAMFSKLLKIDPLLDRDLFLGFSGGEKKRAELFLSLLQSPRLAMLDEPDS
GVDVESAEIIAHAIELLIHKKSSVILVTHTGLITNKLNRIDGVHLLIDGSIAYSGSPDEVLPVVFKFGYRRGVEILKGGK
NG

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=225, Percent_Identity=28.8888888888889, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI11967969, Length=229, Percent_Identity=26.2008733624454, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI116734710, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787972, Length=228, Percent_Identity=39.0350877192982, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790739, Length=234, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=26.2222222222222, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787792, Length=210, Percent_Identity=27.1428571428571, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87082268, Length=223, Percent_Identity=29.1479820627803, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=29.8319327731092, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786654, Length=200, Percent_Identity=27, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=29.4930875576037, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=237, Percent_Identity=25.7383966244726, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787089, Length=204, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=29.8507462686567, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786253, Length=221, Percent_Identity=28.5067873303167, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786319, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994943, Length=231, Percent_Identity=25.1082251082251, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994997, Length=219, Percent_Identity=28.310502283105, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=206, Percent_Identity=30.5825242718447, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=222, Percent_Identity=28.8288288288288, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=238, Percent_Identity=21.8487394957983, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=238, Percent_Identity=21.8487394957983, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17552010, Length=234, Percent_Identity=26.0683760683761, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=233, Percent_Identity=24.8927038626609, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574533, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357907, Length=224, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647959, Length=229, Percent_Identity=26.2008733624454, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85724864, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580555, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85816269, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580553, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552199, Length=229, Percent_Identity=29.6943231441048, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581407, Length=229, Percent_Identity=29.6943231441048, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24581387, Length=215, Percent_Identity=29.7674418604651, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581383, Length=216, Percent_Identity=30.0925925925926, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581385, Length=216, Percent_Identity=30.0925925925926, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076682, Length=224, Percent_Identity=22.7678571428571, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076684, Length=224, Percent_Identity=22.7678571428571, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581617, Length=224, Percent_Identity=22.7678571428571, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581615, Length=224, Percent_Identity=22.7678571428571, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920532, Length=219, Percent_Identity=26.027397260274, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580930, Length=219, Percent_Identity=26.027397260274, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26699; Mature: 26568

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEVQGLSVAVDDRIVLRDISLTIPQGELHIIMGPNGSGKSTLLASLMGLPYLKIISGR
CCEEECCEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCE
IYFDGRDITKLPPYERAKLGIALAHQNPPEVKGVKLREIARFMLEKYRCDDSAMFSKLLK
EEECCCCCCCCCCCCHHEEEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHH
IDPLLDRDLFLGFSGGEKKRAELFLSLLQSPRLAMLDEPDSGVDVESAEIIAHAIELLIH
CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
KKSSVILVTHTGLITNKLNRIDGVHLLIDGSIAYSGSPDEVLPVVFKFGYRRGVEILKGG
CCCCEEEEEECCHHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHCCHHHCCCC
KNG
CCC
>Mature Secondary Structure 
SLEVQGLSVAVDDRIVLRDISLTIPQGELHIIMGPNGSGKSTLLASLMGLPYLKIISGR
CEEECCEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCE
IYFDGRDITKLPPYERAKLGIALAHQNPPEVKGVKLREIARFMLEKYRCDDSAMFSKLLK
EEECCCCCCCCCCCCHHEEEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHH
IDPLLDRDLFLGFSGGEKKRAELFLSLLQSPRLAMLDEPDSGVDVESAEIIAHAIELLIH
CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
KKSSVILVTHTGLITNKLNRIDGVHLLIDGSIAYSGSPDEVLPVVFKFGYRRGVEILKGG
CCCCEEEEEECCHHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHCCHHHCCCC
KNG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12122206; 12799345 [H]