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The map label for this gene is 218883420

Identifier: 218883420

GI number: 218883420

Start: 91016

End: 92104

Strand: Direct

Name: 218883420

Synonym: DKAM_0106

Alternate gene names: NA

Gene position: 91016-92104 (Clockwise)

Preceding gene: 218883419

Following gene: 218883421

Centisome position: 6.67

GC content: 43.99

Gene sequence:

>1089_bases
ATGCTGTCTACAGGTAATTATGCCAGGCTACTTGAATCCATTAATATACGGGAGAACGGTGCCATAATACTGGGTGAAAA
CATATCGATTGATGGATATGCCGAGAAACCAGTTAGAGTGATTACACATGCCCATGTAGATCATTTAGGGGGTTTGGAGG
AGAGTATCAAATACTCTAAGATGATAATCGCTACATCAATCACCCTGGATCTAATTGAATCCCTTAACTACGTTGATAAA
TATCTACTACCATACTACAGGTTAAAGAAGAAGCCATTGAACTATAAGGAGTGCCTGGTCATTGATGACAACGAGACCCT
CTGTCTGTTTCAGGCATCCCACATCCCGGGGGCTGCACAAGTGTACGTTGAGTACAGGGAGCTTAGACTTGGCTATACAG
GTGATTTTAAACTCGACGGCAAAACACAGGTGATGAAGGATCTGGATGTACTCGTGATGGAATCAACTTATGGTAACCCT
AATTATAGGCGGCCATTCAAGGATGGGGTTCCAGAGTTATTCGCGAGCCTTGTTGAAGAAGGCCTCTACCGGTATAAAAG
GGTCTATGTATACGGATATCATGGGAAAGTACAGGAGGCAATGATAATTCTAAGGGAGAAGGGTATTGAGGCACCATTTA
TCCTACCCTCCAAGATATATCATTCGACAAGGGTGCTGGAGAAGTATGGGATTAAGATAGGAAATTATATGCATGAAGAA
GATATGCTCCGCGGGCTAAATCCTGGGGAGAAAGCAGTTATTTTCAAACACATGAATGTAGCTGAATATAGGAGACTTGA
TGGAAGTGCGCTGCATATTGTTCTGAGTGGGTGGGAGTTTAACAAGCCCTTTAGAAGAATAGACGACTACACGTACCTGG
TAGCGTTGAGTGATCACGCGGATTTCGATGACTTGGTGGAATATGTTAGAAGAGGTGAGCCAAAGCTCGTGGTTATTGAT
GCTTCAAGGGAAGGAGATGCTTGGAGCCTTAGGAATGCCTTGATCGAAGCGGGGTACTGTGCCATAGTCATGCCAAGCGC
GAATCCATTGGAGCAATTAAACAAGTGTAGTGGGGGAACGAGTACTTAA

Upstream 100 bases:

>100_bases
AAAGCCTTATATGAGGATAACATGATTCTATATGACTCTAAGACCCGTAGTTGGAAGCCTGTCTCAGATGAAGTAAGAAA
GTAAGCGGGGATACTGGTTC

Downstream 100 bases:

>100_bases
TGACTTATATTCTAATAAGGCATCACATGTTCAATACATACCTAATGGGTCCCGGCGGCTCCGAGTACGTTACACTAGAA
ACAGCTATAGCTTTTACGGA

Product: RNA procession exonuclease-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MLSTGNYARLLESINIRENGAIILGENISIDGYAEKPVRVITHAHVDHLGGLEESIKYSKMIIATSITLDLIESLNYVDK
YLLPYYRLKKKPLNYKECLVIDDNETLCLFQASHIPGAAQVYVEYRELRLGYTGDFKLDGKTQVMKDLDVLVMESTYGNP
NYRRPFKDGVPELFASLVEEGLYRYKRVYVYGYHGKVQEAMIILREKGIEAPFILPSKIYHSTRVLEKYGIKIGNYMHEE
DMLRGLNPGEKAVIFKHMNVAEYRRLDGSALHIVLSGWEFNKPFRRIDDYTYLVALSDHADFDDLVEYVRRGEPKLVVID
ASREGDAWSLRNALIEAGYCAIVMPSANPLEQLNKCSGGTST

Sequences:

>Translated_362_residues
MLSTGNYARLLESINIRENGAIILGENISIDGYAEKPVRVITHAHVDHLGGLEESIKYSKMIIATSITLDLIESLNYVDK
YLLPYYRLKKKPLNYKECLVIDDNETLCLFQASHIPGAAQVYVEYRELRLGYTGDFKLDGKTQVMKDLDVLVMESTYGNP
NYRRPFKDGVPELFASLVEEGLYRYKRVYVYGYHGKVQEAMIILREKGIEAPFILPSKIYHSTRVLEKYGIKIGNYMHEE
DMLRGLNPGEKAVIFKHMNVAEYRRLDGSALHIVLSGWEFNKPFRRIDDYTYLVALSDHADFDDLVEYVRRGEPKLVVID
ASREGDAWSLRNALIEAGYCAIVMPSANPLEQLNKCSGGTST
>Mature_362_residues
MLSTGNYARLLESINIRENGAIILGENISIDGYAEKPVRVITHAHVDHLGGLEESIKYSKMIIATSITLDLIESLNYVDK
YLLPYYRLKKKPLNYKECLVIDDNETLCLFQASHIPGAAQVYVEYRELRLGYTGDFKLDGKTQVMKDLDVLVMESTYGNP
NYRRPFKDGVPELFASLVEEGLYRYKRVYVYGYHGKVQEAMIILREKGIEAPFILPSKIYHSTRVLEKYGIKIGNYMHEE
DMLRGLNPGEKAVIFKHMNVAEYRRLDGSALHIVLSGWEFNKPFRRIDDYTYLVALSDHADFDDLVEYVRRGEPKLVVID
ASREGDAWSLRNALIEAGYCAIVMPSANPLEQLNKCSGGTST

Specific function: Unknown

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41257; Mature: 41257

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00380 RHODANESE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTGNYARLLESINIRENGAIILGENISIDGYAEKPVRVITHAHVDHLGGLEESIKYSK
CCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHH
MIIATSITLDLIESLNYVDKYLLPYYRLKKKPLNYKECLVIDDNETLCLFQASHIPGAAQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCHHH
VYVEYRELRLGYTGDFKLDGKTQVMKDLDVLVMESTYGNPNYRRPFKDGVPELFASLVEE
EEEEEEHEEECCCCCEEECCHHHHHHHHEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHH
GLYRYKRVYVYGYHGKVQEAMIILREKGIEAPFILPSKIYHSTRVLEKYGIKIGNYMHEE
HHHHEEEEEEEEECCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCHHCCCCCHH
DMLRGLNPGEKAVIFKHMNVAEYRRLDGSALHIVLSGWEFNKPFRRIDDYTYLVALSDHA
HHHHCCCCCCCEEEEEECCHHHHHHCCCCEEEEEEECCCCCCCHHHCCCEEEEEEECCCC
DFDDLVEYVRRGEPKLVVIDASREGDAWSLRNALIEAGYCAIVMPSANPLEQLNKCSGGT
CHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
ST
CC
>Mature Secondary Structure
MLSTGNYARLLESINIRENGAIILGENISIDGYAEKPVRVITHAHVDHLGGLEESIKYSK
CCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHH
MIIATSITLDLIESLNYVDKYLLPYYRLKKKPLNYKECLVIDDNETLCLFQASHIPGAAQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCHHH
VYVEYRELRLGYTGDFKLDGKTQVMKDLDVLVMESTYGNPNYRRPFKDGVPELFASLVEE
EEEEEEHEEECCCCCEEECCHHHHHHHHEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHH
GLYRYKRVYVYGYHGKVQEAMIILREKGIEAPFILPSKIYHSTRVLEKYGIKIGNYMHEE
HHHHEEEEEEEEECCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCHHCCCCCHH
DMLRGLNPGEKAVIFKHMNVAEYRRLDGSALHIVLSGWEFNKPFRRIDDYTYLVALSDHA
HHHHCCCCCCCEEEEEECCHHHHHHCCCCEEEEEEECCCCCCCHHHCCCEEEEEEECCCC
DFDDLVEYVRRGEPKLVVIDASREGDAWSLRNALIEAGYCAIVMPSANPLEQLNKCSGGT
CHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
ST
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1437556 [H]