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The map label for this gene is yrdA [H]

Identifier: 218710987

GI number: 218710987

Start: 3253275

End: 3253820

Strand: Direct

Name: yrdA [H]

Synonym: VS_3115

Alternate gene names: 218710987

Gene position: 3253275-3253820 (Clockwise)

Preceding gene: 218710978

Following gene: 218710992

Centisome position: 98.6

GC content: 42.86

Gene sequence:

>546_bases
ATGAGTTCAATACGCAGTTATAAAGGAATATCCCCTCAGATTGGACAAGGTGTTTATATAGATACAAGTTCTGTGCTGGT
TGGTGATATCAAAATCGGTGACGACTCTAGTGTGTGGCCTTTAGTTGCTGCTCGAGGAGATGTGAACCACATTCATATTG
GAGATAGAACGAATATCCAAGACGGCAGCGTTTTGCACGTCACCCATAAGAATGCAGAAAACCCAGAGGGTTATCCTCTA
CTAATAGGTAATGATGTCACTATCGGGCATAAAGTAATGCTGCATGGCTGCACCATTGAAGATCGTGTACTTGTTGGTAT
GGGAGCTATCGTGCTCGATGGCGTGGTTATTAAAGAAGATGTGATGATTGGTGCTGGTAGCTTGGTTCCGCCTAATAAGG
TACTTGAAAGCGGTTATCTCTATGTAGGAAGCCCAGTAAAACAAGCACGCCCATTAAATGATAAAGAGCGTGCCTTTTTA
CAGAAGTCAGCTGACAACTATGTTCAGAATAAAAACGACTACCTAGACTCTGTGTTGCCAGTCTAA

Upstream 100 bases:

>100_bases
TACTTTTTTGATTGTTCGAGCGTTTTTTGTTCAAAACACCCCGTTTTCACTAGTATTCCCCTTAATTAAGGGCTTAAGGT
GCCTATATAAAGGAGGATTT

Downstream 100 bases:

>100_bases
AGCACTTTGATCTGAATCCGATTAGAGGAGTCATACTCCTCTTCTTCTATTAACTCTTCCGCTAGCTCTTCAATATCGAA
ACGTAACTCAGAAAAGATAA

Product: carbonic anhydrase, family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSSIRSYKGISPQIGQGVYIDTSSVLVGDIKIGDDSSVWPLVAARGDVNHIHIGDRTNIQDGSVLHVTHKNAENPEGYPL
LIGNDVTIGHKVMLHGCTIEDRVLVGMGAIVLDGVVIKEDVMIGAGSLVPPNKVLESGYLYVGSPVKQARPLNDKERAFL
QKSADNYVQNKNDYLDSVLPV

Sequences:

>Translated_181_residues
MSSIRSYKGISPQIGQGVYIDTSSVLVGDIKIGDDSSVWPLVAARGDVNHIHIGDRTNIQDGSVLHVTHKNAENPEGYPL
LIGNDVTIGHKVMLHGCTIEDRVLVGMGAIVLDGVVIKEDVMIGAGSLVPPNKVLESGYLYVGSPVKQARPLNDKERAFL
QKSADNYVQNKNDYLDSVLPV
>Mature_180_residues
SSIRSYKGISPQIGQGVYIDTSSVLVGDIKIGDDSSVWPLVAARGDVNHIHIGDRTNIQDGSVLHVTHKNAENPEGYPLL
IGNDVTIGHKVMLHGCTIEDRVLVGMGAIVLDGVVIKEDVMIGAGSLVPPNKVLESGYLYVGSPVKQARPLNDKERAFLQ
KSADNYVQNKNDYLDSVLPV

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=174, Percent_Identity=66.0919540229885, Blast_Score=244, Evalue=3e-66,
Organism=Escherichia coli, GI1787667, Length=162, Percent_Identity=35.8024691358025, Blast_Score=107, Evalue=3e-25,
Organism=Escherichia coli, GI87081681, Length=168, Percent_Identity=30.3571428571429, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19500; Mature: 19369

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIRSYKGISPQIGQGVYIDTSSVLVGDIKIGDDSSVWPLVAARGDVNHIHIGDRTNIQ
CCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCC
DGSVLHVTHKNAENPEGYPLLIGNDVTIGHKVMLHGCTIEDRVLVGMGAIVLDGVVIKED
CCCEEEEEECCCCCCCCCEEEEECCEEECEEEEEECCCCCCEEEEECCHHHHCCEEEECC
VMIGAGSLVPPNKVLESGYLYVGSPVKQARPLNDKERAFLQKSADNYVQNKNDYLDSVLP
EEEECCCCCCHHHHHHCCCEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCC
V
C
>Mature Secondary Structure 
SSIRSYKGISPQIGQGVYIDTSSVLVGDIKIGDDSSVWPLVAARGDVNHIHIGDRTNIQ
CCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCC
DGSVLHVTHKNAENPEGYPLLIGNDVTIGHKVMLHGCTIEDRVLVGMGAIVLDGVVIKED
CCCEEEEEECCCCCCCCCEEEEECCEEECEEEEEECCCCCCEEEEECCHHHHCCEEEECC
VMIGAGSLVPPNKVLESGYLYVGSPVKQARPLNDKERAFLQKSADNYVQNKNDYLDSVLP
EEEECCCCCCHHHHHHCCCEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]