Click here to switch to the map view.

The map label for this gene is pilA [H]

Identifier: 218710508

GI number: 218710508

Start: 2739554

End: 2739964

Strand: Direct

Name: pilA [H]

Synonym: VS_2547

Alternate gene names: 218710508

Gene position: 2739554-2739964 (Clockwise)

Preceding gene: 218710507

Following gene: 218710509

Centisome position: 83.03

GC content: 41.12

Gene sequence:

>411_bases
ATGAAAAACAAAAGAAAAAACCAGAAAGGCTTCACGCTGATTGAATTGATGATTGTGGTTGCGATCATTGGTGTGCTGTC
TGCAATTGCAATTCCGGCTTATAAAGATTATGTATCTAAAAGTGAACTATCCTCTGGTTTAGCCACAATGAGAGCACTAA
TTACACCAGCAGAATTAATCCATCAAGAAAAGGGCGTGATCGTTCAAGCTACCGCTTTGGGCGATCTAGGAACAGCTACA
GATGCAAATTCACTTGGTAAAATAACAGTTTCAGCTGACGACACACTGTTATTCACTTTTGGAGCAACTAGCTCAATAAG
TGCAGCAACCTTAACATTTGCTCGAGGTAACTCTGGGTGGGTTTGTACTAACAGTAAACAAGCAACGATCCCTCTAGATG
GCTGTGTGTAG

Upstream 100 bases:

>100_bases
GCGCCCGCACCTGAACACCATTCCACTTCTCGATCTCAACTTCTATTCTCTCCATCAACCGGTGCTTGCACTGAAACAAA
CTAACTAATGGAATAGAACT

Downstream 100 bases:

>100_bases
TGCTAACCAACCTCCCAACAGTTCTCCGTCAGGCTAACTTACTTAGCCTGACTCAAGAACAAGCCGTTGCGGAACATGTA
CAAGCTTCAGGTATTTCTAC

Product: fimbrial protein

Products: NA

Alternate protein names: Pilin [H]

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELIHQEKGVIVQATALGDLGTAT
DANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGWVCTNSKQATIPLDGCV

Sequences:

>Translated_136_residues
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELIHQEKGVIVQATALGDLGTAT
DANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGWVCTNSKQATIPLDGCV
>Mature_136_residues
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELIHQEKGVIVQATALGDLGTAT
DANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGWVCTNSKQATIPLDGCV

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000983
- InterPro:   IPR001082
- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl; PF00114 Pilin [H]

EC number: NA

Molecular weight: Translated: 14191; Mature: 14191

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
HQEKGVIVQATALGDLGTATDANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGW
HCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCE
VCTNSKQATIPLDGCV
EEECCCCEEEECCCCC
>Mature Secondary Structure
MKNKRKNQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSELSSGLATMRALITPAELI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
HQEKGVIVQATALGDLGTATDANSLGKITVSADDTLLFTFGATSSISAATLTFARGNSGW
HCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCE
VCTNSKQATIPLDGCV
EEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7905475 [H]