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The map label for this gene is ydiK [C]

Identifier: 218710464

GI number: 218710464

Start: 2679365

End: 2680450

Strand: Direct

Name: ydiK [C]

Synonym: VS_2503

Alternate gene names: 218710464

Gene position: 2679365-2680450 (Clockwise)

Preceding gene: 218710463

Following gene: 218710465

Centisome position: 81.21

GC content: 44.48

Gene sequence:

>1086_bases
GTGTCAGAAAAACTCAAAATCAACACCAGCCACTGGGTGATCATCATTGCCCTACTTGCGGCGGCTTATGCTTGTTACTT
GCTTATCGAGCCTTATGTAAATTCCATAGTAATGGCATTCATCATCTCGTTGCTGATGTTTCCAATTCACGAATGGCTTG
AAAAGAAGATACCGAATAAAGAGAACGTAGTCTCTCTACTTTCTTGTGTGATCCTGACTTTCATTATTGTTATCCCTTTA
TTGGCAGTATTCGCAGCAATTGTTCAGCAAGGCTCTCTGTTCTCTCAGAACACCTACCAATGGGTGACCCACGGCGGTAT
TCAAACTCTGTTTGCACACCCACTTGTGGTCAAAGCGCTGTCGTTTGTGAATAACTACCTGCCTTTCGACAACATTGAGC
CCCAAGCCATCGCACAGAAAGTCGGAGAATTCGCGACAAGTTTTGGTTCTAAACTGGTTGGTATCAGTGCGAAAATCCTT
GGTGATGCGACCAACTTCTTAATGGATTTCTTCTTGATGCTGTTTGTTCTGTTCTTCTTATTAAGAGATCACGACAAAAT
CATCAGTGTGGTTCGTCATATTCTTCCGCTATCTCGTAGCCAAGAAGACAAGCTCCTCACTGAGATTGAGCAAGTTTCTA
AGTCTGCAGTTATGGGCTCATTCTTAACCGCAATAGCGCAAGGTTTTGCGGGTGGTTTAGGTATGTGGATTGCTGGTTTC
CCTGGGTTGTTCTGGGGCACTATGATGGGCTTTGCCTCTTTCATCCCCGTGGTCGGTACCGCTCTAATCTGGATCCCAGC
CGCAACCTACTTATTCCTAACCGGTGATACCACGTGGGCAATTTTCCTAACGGTTTACTGTGTCGCGATTGTTGGCTCAA
TTGACAACCTACTGCGCCCGCTGCTGATGCAAGGCAGTGCAGGCATGAATACCCTAATGATCTTCTTCTCACTGTTGGGT
GGTATTCAACTTTTTGGCCTAATTGGTCTTATCTACGGCCCACTGATCTTTGCTATTACTATCGTTCTTTTCAATATTTA
CGATGAAGAGTTTAAAGACTTTTTAAACCAGCAAGACAAGAGTTGA

Upstream 100 bases:

>100_bases
CTTATCTTTATTACAGCATCCCATTATCAAAACTCCTCATTGCTAACTCTCTGTTTTGCAGCCATTATAAACTCAGAACG
CAAATATAGAGACCATTAAC

Downstream 100 bases:

>100_bases
TCAACTGTTCAGCAACTTGGTTGCCGAACCCGTATTAAACACTTCAAGCTTTGGGCGGATTATGCGAAAATCCGCCCTCA
TTTTTTGCTAACGATTCAAT

Product: putative permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSEKLKINTSHWVIIIALLAAAYACYLLIEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPL
LAVFAAIVQQGSLFSQNTYQWVTHGGIQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFATSFGSKLVGISAKIL
GDATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGF
PGLFWGTMMGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLG
GIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS

Sequences:

>Translated_361_residues
MSEKLKINTSHWVIIIALLAAAYACYLLIEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPL
LAVFAAIVQQGSLFSQNTYQWVTHGGIQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFATSFGSKLVGISAKIL
GDATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGF
PGLFWGTMMGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLG
GIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS
>Mature_360_residues
SEKLKINTSHWVIIIALLAAAYACYLLIEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPLL
AVFAAIVQQGSLFSQNTYQWVTHGGIQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFATSFGSKLVGISAKILG
DATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFP
GLFWGTMMGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGG
IQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=337, Percent_Identity=25.8160237388724, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788838, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39963; Mature: 39832

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLKINTSHWVIIIALLAAAYACYLLIEPYVNSIVMAFIISLLMFPIHEWLEKKIPNK
CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ENVVSLLSCVILTFIIVIPLLAVFAAIVQQGSLFSQNTYQWVTHGGIQTLFAHPLVVKAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH
SFVNNYLPFDNIEPQAIAQKVGEFATSFGSKLVGISAKILGDATNFLMDFFLMLFVLFFL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDHDKIISVVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGF
HHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
PGLFWGTMMGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
S
C
>Mature Secondary Structure 
SEKLKINTSHWVIIIALLAAAYACYLLIEPYVNSIVMAFIISLLMFPIHEWLEKKIPNK
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]