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The map label for this gene is ygdH [H]

Identifier: 218710357

GI number: 218710357

Start: 2561823

End: 2563190

Strand: Direct

Name: ygdH [H]

Synonym: VS_2393

Alternate gene names: 218710357

Gene position: 2561823-2563190 (Clockwise)

Preceding gene: 218710356

Following gene: 218710358

Centisome position: 77.65

GC content: 47.37

Gene sequence:

>1368_bases
ATGATCACTCATATCAGCCCTGCCGGTAGCATGGATTTACTCTCTCAACTTGAAGTTGAGCGTCTTAAGAAAACCGCATC
TAGTGATCTGTACCAGCTTTATCGTAACTGTACGTTAGCGGTACTCAACTCGGGTAGCCACACCGACAACTCCAAAGAGC
TGCTCGATAAATATCAATCGTTTGATGTTGAGGTCGTCCGTCGTGAGCGCGGGATCAAACTCGAACTAAGTAACCCTCCA
GAACATGCCTTTGTGGATGGTGAAATCATCAAGGGTATCCAAGAACACCTATTCTCGGTGCTGCGTGACATTGTCTACGT
CAACATGCATCTTGCAGACAACCAAAGACTCAACCTGACTAATGCCACTCATATTACCAACCTTGTGTTTGGTATCTTGA
GAAATGCAGGTGCACTTACGCCAGGTATCGAACCTAACCTGATCGTGTGCTGGGGTGGTCATTCAATTAATGCCACTGAA
TACCAATACACTCGTGAAGTGGGTAATGAACTTGGCCTACGTGAACTAAACATCTGTACCGGTTGTGGACCGGGGGCAAT
GGAAGGGCCAATGAAAGGAGCTGCAATTGGTCACGCGAAACAGCGCTATACAGACCACCGTTACTTAGGGCTAACTGAAC
CATCAATCATTGCGGCTGAGCCACCAAACCCGATAGTGAACGAACTGGTGATCATGCCAGATATCGAGAAGCGTCTTGAG
GCATTCGTTCGTATGGCGCATGGCATCATTATTTTCCCCGGTGGTCCAGGTACGGCTGAGGAGCTGCTGTATATCTTAGG
GATCATGATGCACCCAAATAACGTCGACCAACCAATGCCGATTGTTTTAACAGGTTCAAAAGAGAGTGAAGCTTACTTCC
GTTCTATCGACAAGTTCATCGGCGAAACCTTAGGGCCTGATGCGCAAAAACACTATGAGATCGTGATTGATGACCCAGCA
CGCGCTGCGAAAATCATGAAACAGGCAATGCCAGATGTACGCTCTCACCGTAAAGAGACTGGCGATGCCTACAGCTACAA
CTGGTCACTGCATATTGAACCTGAGTTCCAACTGCCATTCGACCCTACACATGAATCTATGGCGGCGCTTGATCTGCATA
TGGATCAGAAAACAGAAAGCCTTGCGGCGAATCTACGTAAAGCCTTCTCTGGAATTGTGGCAGGTAACGTCAAAGCTGAA
GGTATTTTGGAGATAGAGAAACATGGCCCCTTCCTGATTGATGGCGACAAAGAGCTGATGACAAAAATGGACCAGCTGCT
GAATGACTTTGTTGAACAGCATCGAATGAAACTGCCGGGCGGCACTGACTATGTTCCTTGCTATAAAATTATGCCTAGCA
GCGAATAA

Upstream 100 bases:

>100_bases
ATTCTCTCGCCTTTAACCAAACACTTTCAACGTTAGCTTCTCATCTCGAACTAAAGGGCCACTTCCAACCTCCCCTAGTT
CTTTTCAACAAGGAGGCACT

Downstream 100 bases:

>100_bases
CGGCAAGTAACTGATAACAAGCCACAAGTATAAAGTTAAACAAGTCATGACGTTTACGTCACCAAAGTTTCAACTCACCA
AGTGATACGTTACTATAAGG

Product: decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MITHISPAGSMDLLSQLEVERLKKTASSDLYQLYRNCTLAVLNSGSHTDNSKELLDKYQSFDVEVVRRERGIKLELSNPP
EHAFVDGEIIKGIQEHLFSVLRDIVYVNMHLADNQRLNLTNATHITNLVFGILRNAGALTPGIEPNLIVCWGGHSINATE
YQYTREVGNELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYTDHRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPNNVDQPMPIVLTGSKESEAYFRSIDKFIGETLGPDAQKHYEIVIDDPA
RAAKIMKQAMPDVRSHRKETGDAYSYNWSLHIEPEFQLPFDPTHESMAALDLHMDQKTESLAANLRKAFSGIVAGNVKAE
GILEIEKHGPFLIDGDKELMTKMDQLLNDFVEQHRMKLPGGTDYVPCYKIMPSSE

Sequences:

>Translated_455_residues
MITHISPAGSMDLLSQLEVERLKKTASSDLYQLYRNCTLAVLNSGSHTDNSKELLDKYQSFDVEVVRRERGIKLELSNPP
EHAFVDGEIIKGIQEHLFSVLRDIVYVNMHLADNQRLNLTNATHITNLVFGILRNAGALTPGIEPNLIVCWGGHSINATE
YQYTREVGNELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYTDHRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPNNVDQPMPIVLTGSKESEAYFRSIDKFIGETLGPDAQKHYEIVIDDPA
RAAKIMKQAMPDVRSHRKETGDAYSYNWSLHIEPEFQLPFDPTHESMAALDLHMDQKTESLAANLRKAFSGIVAGNVKAE
GILEIEKHGPFLIDGDKELMTKMDQLLNDFVEQHRMKLPGGTDYVPCYKIMPSSE
>Mature_455_residues
MITHISPAGSMDLLSQLEVERLKKTASSDLYQLYRNCTLAVLNSGSHTDNSKELLDKYQSFDVEVVRRERGIKLELSNPP
EHAFVDGEIIKGIQEHLFSVLRDIVYVNMHLADNQRLNLTNATHITNLVFGILRNAGALTPGIEPNLIVCWGGHSINATE
YQYTREVGNELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYTDHRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPNNVDQPMPIVLTGSKESEAYFRSIDKFIGETLGPDAQKHYEIVIDDPA
RAAKIMKQAMPDVRSHRKETGDAYSYNWSLHIEPEFQLPFDPTHESMAALDLHMDQKTESLAANLRKAFSGIVAGNVKAE
GILEIEKHGPFLIDGDKELMTKMDQLLNDFVEQHRMKLPGGTDYVPCYKIMPSSE

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=453, Percent_Identity=67.991169977925, Blast_Score=658, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50681; Mature: 50681

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHISPAGSMDLLSQLEVERLKKTASSDLYQLYRNCTLAVLNSGSHTDNSKELLDKYQS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHC
FDVEVVRRERGIKLELSNPPEHAFVDGEIIKGIQEHLFSVLRDIVYVNMHLADNQRLNLT
CCHHHHHHCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECC
NATHITNLVFGILRNAGALTPGIEPNLIVCWGGHSINATEYQYTREVGNELGLRELNICT
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEC
GCGPGAMEGPMKGAAIGHAKQRYTDHRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
CCCCCCCCCCCCCCHHCCHHHHCCCCCEECCCCCCEEECCCCCHHHHCEEECCCHHHHHH
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPNNVDQPMPIVLTGSKESEAYFRSIDKFI
HHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
GETLGPDAQKHYEIVIDDPARAAKIMKQAMPDVRSHRKETGDAYSYNWSLHIEPEFQLPF
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEECCC
DPTHESMAALDLHMDQKTESLAANLRKAFSGIVAGNVKAEGILEIEKHGPFLIDGDKELM
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCHHHH
TKMDQLLNDFVEQHRMKLPGGTDYVPCYKIMPSSE
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MITHISPAGSMDLLSQLEVERLKKTASSDLYQLYRNCTLAVLNSGSHTDNSKELLDKYQS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHC
FDVEVVRRERGIKLELSNPPEHAFVDGEIIKGIQEHLFSVLRDIVYVNMHLADNQRLNLT
CCHHHHHHCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECC
NATHITNLVFGILRNAGALTPGIEPNLIVCWGGHSINATEYQYTREVGNELGLRELNICT
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEC
GCGPGAMEGPMKGAAIGHAKQRYTDHRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
CCCCCCCCCCCCCCHHCCHHHHCCCCCEECCCCCCEEECCCCCHHHHCEEECCCHHHHHH
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPNNVDQPMPIVLTGSKESEAYFRSIDKFI
HHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
GETLGPDAQKHYEIVIDDPARAAKIMKQAMPDVRSHRKETGDAYSYNWSLHIEPEFQLPF
HHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEECCC
DPTHESMAALDLHMDQKTESLAANLRKAFSGIVAGNVKAEGILEIEKHGPFLIDGDKELM
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCHHHH
TKMDQLLNDFVEQHRMKLPGGTDYVPCYKIMPSSE
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]