| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is bcp [H]
Identifier: 218710274
GI number: 218710274
Start: 2476079
End: 2476549
Strand: Direct
Name: bcp [H]
Synonym: VS_2307
Alternate gene names: 218710274
Gene position: 2476079-2476549 (Clockwise)
Preceding gene: 218710273
Following gene: 218710277
Centisome position: 75.05
GC content: 41.4
Gene sequence:
>471_bases ATGAATACGCTAACGGCTGGTGTTCCAGCACCTGCATTTTCTCTTCCAGATCAAGATGGCAATATCGTATCTCTTGGTGA CTTCAAAGGTAAAAAAGTCCTTTTCTATTTTTACCCAAAAGCAATGACTCCAGGTTGTATTGTGCAAGCTGAAGGCCTGC GTGATATCAAAGCACAGCTTGATGATCTGAATGTGGTTGTTTTAGGTGTGAGTGTTGACCCAGTTAAACGCCTACCAAAT TTCGTTGCGAAGAAATCTCTGAACTTCACACTTCTATCTGATGAAGACCACAGTGTTGCTGAACAGTTTGGTGTTTGGGG CGAGAAGAAATTTATGGGTAAAGTGTACGATGGTCTGCACCGTATTAGCTTTCTAATTGATGAAGAAGGTCAGATTGAAC ATGTCTTCAACAAGTTCAAAACAAAGACTCACCACGAAGTGGTTCTAGACTACTTCAACCCAGAAGCTTAA
Upstream 100 bases:
>100_bases TTTGATGCAGCTACAAGAAGAATTCGACGCGCTGTGTCAGAGCCTATCCGTACAAGGCTCGCTCAACTTTATCAAAAACA GTTTTTAAAAAGGAAATATC
Downstream 100 bases:
>100_bases TCTCGACTTCAGTGAGTTGACTCTCTGAGTTAATACCTAGCGAATCTAAATACACTACTCACTACTAAGCCAAATGCAAA AAGGCCGAATATCATGGATA
Product: putative peroxiredoxin bcp
Products: NA
Alternate protein names: Bacterioferritin comigratory protein homolog; Thioredoxin reductase [H]
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MNTLTAGVPAPAFSLPDQDGNIVSLGDFKGKKVLFYFYPKAMTPGCIVQAEGLRDIKAQLDDLNVVVLGVSVDPVKRLPN FVAKKSLNFTLLSDEDHSVAEQFGVWGEKKFMGKVYDGLHRISFLIDEEGQIEHVFNKFKTKTHHEVVLDYFNPEA
Sequences:
>Translated_156_residues MNTLTAGVPAPAFSLPDQDGNIVSLGDFKGKKVLFYFYPKAMTPGCIVQAEGLRDIKAQLDDLNVVVLGVSVDPVKRLPN FVAKKSLNFTLLSDEDHSVAEQFGVWGEKKFMGKVYDGLHRISFLIDEEGQIEHVFNKFKTKTHHEVVLDYFNPEA >Mature_156_residues MNTLTAGVPAPAFSLPDQDGNIVSLGDFKGKKVLFYFYPKAMTPGCIVQAEGLRDIKAQLDDLNVVVLGVSVDPVKRLPN FVAKKSLNFTLLSDEDHSVAEQFGVWGEKKFMGKVYDGLHRISFLIDEEGQIEHVFNKFKTKTHHEVVLDYFNPEA
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788825, Length=156, Percent_Identity=64.7435897435898, Blast_Score=209, Evalue=7e-56, Organism=Saccharomyces cerevisiae, GI6322180, Length=112, Percent_Identity=37.5, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17430; Mature: 17430
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLTAGVPAPAFSLPDQDGNIVSLGDFKGKKVLFYFYPKAMTPGCIVQAEGLRDIKAQL CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHH DDLNVVVLGVSVDPVKRLPNFVAKKSLNFTLLSDEDHSVAEQFGVWGEKKFMGKVYDGLH CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHH RISFLIDEEGQIEHVFNKFKTKTHHEVVLDYFNPEA HHHEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC >Mature Secondary Structure MNTLTAGVPAPAFSLPDQDGNIVSLGDFKGKKVLFYFYPKAMTPGCIVQAEGLRDIKAQL CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHH DDLNVVVLGVSVDPVKRLPNFVAKKSLNFTLLSDEDHSVAEQFGVWGEKKFMGKVYDGLH CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHH RISFLIDEEGQIEHVFNKFKTKTHHEVVLDYFNPEA HHHEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]