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The map label for this gene is yfgC [C]

Identifier: 218710277

GI number: 218710277

Start: 2478178

End: 2479632

Strand: Direct

Name: yfgC [C]

Synonym: VS_2311

Alternate gene names: 218710277

Gene position: 2478178-2479632 (Clockwise)

Preceding gene: 218710274

Following gene: 218710278

Centisome position: 75.11

GC content: 46.87

Gene sequence:

>1455_bases
ATGTTTAAACGCGCTCGCTCAATTGCTTGCTTATGCATCGCAGCTACATTAAGCACTCCAACGTTGGCAAATACCAATGG
TTTGGAGCTACCCGATATCGGCACCGCGGCTGGCGGCACACTCACTATCGACCAAGAACTTATCTATGGTGATGCCTACA
TGCGCATCATCAGAAGCAGCCAGCCTATTGTAAACGACCCGGTTCTAAACCAATACATTGACACGCTTGGCCATCGCCTT
GTCGCGAACGCAAATGATGTAAAGACTCCTTTTCAGTTCTTTATGATCCGTGACCGAAACATCAACGCTTTTGCTTTTTT
TGGTGGTTATGTTGCTTTGCACTCAGGTTTGTTCTTGCATGCACAGTCTGAAAGTGAACTCGCTTCCGTATTGGCGCACG
AAATCGCGCATGTTACCCAGCGTCACTTAGCACGTAGTATGGAAGATCAAGCTCGCCGCTCTCCTGCAACCATCGCAGCA
TTGGCCGCTTCTGTATTATTAGCGATTGCAGCACCAGAAGCCGGTATCGCAGCTATCACTGCAACAACTGCTGGTAACAT
GCAAAGCCAAATAAACTACACCCGAAGTAATGAAAAAGAAGCCGACCGCTTTGGCATCAACACGCTTGCAAAAGCAGGGT
TCGATGTAAACGCTATGCCACGTTTCTTTGGCCGCTTAGCTGATGAATACCGCTATGCAAGCACACCGCCACCAATGCTA
TTAACTCACCCGTTGCCTGAAGACCGAATCACAGATTCACGCGCCCGTGCTCGCAGCTATACACCACTAAAACTGGCTCC
GTCACTGGATTATCATTTAGCAAGAGCCCGGATTGTTGCACGCTATGCAGGTATTAATAATGATGCAGCTCTTGATTGGT
TTGAGCGAAAGCTGAAGAAAGCCCCCAAAGCCTTGGTTCCATCATTAGAGTATGGACAAGCACTGGTTTACCTAGATTCA
AAAAAACTAGATAAAGCAGAACCGATTCTGACCAAGCTGATGAATAGCGACCCAACCAACTTGTTCTATCTGGATGCTAT
TTCAGATCTGCACATTGAACAGAAAAAGCCTGAGATTGCGATTAAAGAACTTAAGTCAGCACTTGAGCGTCAACCAAACA
ACTCAGTTCTAACCATAAACTACGCCAATGCACTGATCGAAAATGAAAACCTACAGGAAGCCGTTCGCGTGTTGCAACGT
TACACGCACGATAACCCGAACGACACCAATGGGTGGTACCTGCTTTCAAAGGCAAATACAAACCTTGGCAACAGCGATGA
AGAATTGTCTGCTAGGGCAGAGATTTTGGCACTGCAAGCCAACTGGAACAAAGCGATTCAGTACTACACGCAGGCGAGCC
AAATCGCAGAACTAGGCAGCCTAAAACAAGCACGTTATGACGCTCGAATTGATCAACTAATGATACAGCGCGAACGCTTC
TTATCGTTGCAATAA

Upstream 100 bases:

>100_bases
CATGATAGCGCACGCACTTGGTAAAGGTTAAATCAGATAGAGAACCAATTTGCATTGCACTTGTCTTACTGTCAGAAGAA
ACGGAGTATTACTGACTAAT

Downstream 100 bases:

>100_bases
GTATATTGACTGGCAGCAAAGCTCGTTGCCAAAATACAAAGAAAGCTCAACGTTACACAATAATAAGCCACTCAGTTGGC
TTCGACTGAACTATTAAATC

Product: putative M48 family membrane-associated zinc metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MFKRARSIACLCIAATLSTPTLANTNGLELPDIGTAAGGTLTIDQELIYGDAYMRIIRSSQPIVNDPVLNQYIDTLGHRL
VANANDVKTPFQFFMIRDRNINAFAFFGGYVALHSGLFLHAQSESELASVLAHEIAHVTQRHLARSMEDQARRSPATIAA
LAASVLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVNAMPRFFGRLADEYRYASTPPPML
LTHPLPEDRITDSRARARSYTPLKLAPSLDYHLARARIVARYAGINNDAALDWFERKLKKAPKALVPSLEYGQALVYLDS
KKLDKAEPILTKLMNSDPTNLFYLDAISDLHIEQKKPEIAIKELKSALERQPNNSVLTINYANALIENENLQEAVRVLQR
YTHDNPNDTNGWYLLSKANTNLGNSDEELSARAEILALQANWNKAIQYYTQASQIAELGSLKQARYDARIDQLMIQRERF
LSLQ

Sequences:

>Translated_484_residues
MFKRARSIACLCIAATLSTPTLANTNGLELPDIGTAAGGTLTIDQELIYGDAYMRIIRSSQPIVNDPVLNQYIDTLGHRL
VANANDVKTPFQFFMIRDRNINAFAFFGGYVALHSGLFLHAQSESELASVLAHEIAHVTQRHLARSMEDQARRSPATIAA
LAASVLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVNAMPRFFGRLADEYRYASTPPPML
LTHPLPEDRITDSRARARSYTPLKLAPSLDYHLARARIVARYAGINNDAALDWFERKLKKAPKALVPSLEYGQALVYLDS
KKLDKAEPILTKLMNSDPTNLFYLDAISDLHIEQKKPEIAIKELKSALERQPNNSVLTINYANALIENENLQEAVRVLQR
YTHDNPNDTNGWYLLSKANTNLGNSDEELSARAEILALQANWNKAIQYYTQASQIAELGSLKQARYDARIDQLMIQRERF
LSLQ
>Mature_484_residues
MFKRARSIACLCIAATLSTPTLANTNGLELPDIGTAAGGTLTIDQELIYGDAYMRIIRSSQPIVNDPVLNQYIDTLGHRL
VANANDVKTPFQFFMIRDRNINAFAFFGGYVALHSGLFLHAQSESELASVLAHEIAHVTQRHLARSMEDQARRSPATIAA
LAASVLLAIAAPEAGIAAITATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVNAMPRFFGRLADEYRYASTPPPML
LTHPLPEDRITDSRARARSYTPLKLAPSLDYHLARARIVARYAGINNDAALDWFERKLKKAPKALVPSLEYGQALVYLDS
KKLDKAEPILTKLMNSDPTNLFYLDAISDLHIEQKKPEIAIKELKSALERQPNNSVLTINYANALIENENLQEAVRVLQR
YTHDNPNDTNGWYLLSKANTNLGNSDEELSARAEILALQANWNKAIQYYTQASQIAELGSLKQARYDARIDQLMIQRERF
LSLQ

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=488, Percent_Identity=47.5409836065574, Blast_Score=432, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53820; Mature: 53820

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRARSIACLCIAATLSTPTLANTNGLELPDIGTAAGGTLTIDQELIYGDAYMRIIRSS
CCCCHHHHHHHEEEHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
QPIVNDPVLNQYIDTLGHRLVANANDVKTPFQFFMIRDRNINAFAFFGGYVALHSGLFLH
CCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCEEEE
AQSESELASVLAHEIAHVTQRHLARSMEDQARRSPATIAALAASVLLAIAAPEAGIAAIT
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVNAMPRFFGRLADEYRYASTPPPML
EECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
LTHPLPEDRITDSRARARSYTPLKLAPSLDYHLARARIVARYAGINNDAALDWFERKLKK
EECCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
APKALVPSLEYGQALVYLDSKKLDKAEPILTKLMNSDPTNLFYLDAISDLHIEQKKPEIA
CCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH
IKELKSALERQPNNSVLTINYANALIENENLQEAVRVLQRYTHDNPNDTNGWYLLSKANT
HHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
NLGNSDEELSARAEILALQANWNKAIQYYTQASQIAELGSLKQARYDARIDQLMIQRERF
CCCCCHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLQ
CCCC
>Mature Secondary Structure
MFKRARSIACLCIAATLSTPTLANTNGLELPDIGTAAGGTLTIDQELIYGDAYMRIIRSS
CCCCHHHHHHHEEEHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
QPIVNDPVLNQYIDTLGHRLVANANDVKTPFQFFMIRDRNINAFAFFGGYVALHSGLFLH
CCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCEEEE
AQSESELASVLAHEIAHVTQRHLARSMEDQARRSPATIAALAASVLLAIAAPEAGIAAIT
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ATTAGNMQSQINYTRSNEKEADRFGINTLAKAGFDVNAMPRFFGRLADEYRYASTPPPML
EECCCCHHHHCCCCCCCCHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
LTHPLPEDRITDSRARARSYTPLKLAPSLDYHLARARIVARYAGINNDAALDWFERKLKK
EECCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
APKALVPSLEYGQALVYLDSKKLDKAEPILTKLMNSDPTNLFYLDAISDLHIEQKKPEIA
CCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH
IKELKSALERQPNNSVLTINYANALIENENLQEAVRVLQRYTHDNPNDTNGWYLLSKANT
HHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
NLGNSDEELSARAEILALQANWNKAIQYYTQASQIAELGSLKQARYDARIDQLMIQRERF
CCCCCHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]