| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710244
Identifier: 218710244
GI number: 218710244
Start: 2446598
End: 2447332
Strand: Reverse
Name: 218710244
Synonym: VS_2277
Alternate gene names: NA
Gene position: 2447332-2446598 (Counterclockwise)
Preceding gene: 218710250
Following gene: 218710243
Centisome position: 74.18
GC content: 49.52
Gene sequence:
>735_bases ATGACGGCAGTGCTTGTTTTGTTTCGAGCCATGTTAGGTAGTCTAAGGGATCTCTTGCCGATCGTGGCGGTGATTGCTTT CTTCCAGCTTGCTGTTTTGCAAGAACCACTCCCTCATCTGTTGTCTATTCTAACTGGCTTAGTGCTGGTGGTTTTTGGAC TGACTTTTTTTATCTTTGGCCTTGAGATGGGTCTGTTCCCAATCGGCGAGTCGATGGCTCAAGCTTTTGCTCGTAAGGGG AGCGTGTTTTGGTTATTGACCTTCGCTTTCTGTTTAGGGTTTGGTACCACCATTGCGGAACCCGCACTAACCGCAGTGGC CGCCGAAGCAGCAGAAGTGGCCGCTGAAGGTGGTGTTATTCCCAACTCTCTAGACGAAATGGAACAGTACGCCGATGGTT TGCGTTTCACCGTAGCATTGTCGGTGGGGATCGCCATCTTACTTGGTGTGCTGCGAATCTTAAAAGGTTGGCCAATTCAG TACATGATCATCGGAGGTTATATTGGAGTTGTGGTGCTCACTGCATTTGCTCCTGAAAACATCATTGGGATTGCGTACGA CTCTGGCGGAGTGACTACATCGACCATTACCGTTCCGTTAGTGACCGCATTGGGAGTGGGTTTGGCCTCTGCGATTAAAG GGCGAAATCCGATGATTGATGGCTTTGGATTGATCGCCTTTGCTTCACTGCTGCCGATGATGTTTGTCATGGTCTACGGG ATGGTGGTGACATGA
Upstream 100 bases:
>100_bases TTACCAACTGCGTAATATTTGTCACATAAGGAATGATAAGGATTTGCCATGATTATTAGTAATTAATAACCAGACACAAT TTCAATGACTAGGAGTTGCG
Downstream 100 bases:
>100_bases TCAGTGCTCAGCAATTTATTGACACCTTTCTTGGCACTGTCATGGATGTGATTCCGATTGCGGTGATCATCTTCGGTTTC CAATTAGCGGTGCTGCGTAA
Product: major facilitator superfamily permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTAVLVLFRAMLGSLRDLLPIVAVIAFFQLAVLQEPLPHLLSILTGLVLVVFGLTFFIFGLEMGLFPIGESMAQAFARKG SVFWLLTFAFCLGFGTTIAEPALTAVAAEAAEVAAEGGVIPNSLDEMEQYADGLRFTVALSVGIAILLGVLRILKGWPIQ YMIIGGYIGVVVLTAFAPENIIGIAYDSGGVTTSTITVPLVTALGVGLASAIKGRNPMIDGFGLIAFASLLPMMFVMVYG MVVT
Sequences:
>Translated_244_residues MTAVLVLFRAMLGSLRDLLPIVAVIAFFQLAVLQEPLPHLLSILTGLVLVVFGLTFFIFGLEMGLFPIGESMAQAFARKG SVFWLLTFAFCLGFGTTIAEPALTAVAAEAAEVAAEGGVIPNSLDEMEQYADGLRFTVALSVGIAILLGVLRILKGWPIQ YMIIGGYIGVVVLTAFAPENIIGIAYDSGGVTTSTITVPLVTALGVGLASAIKGRNPMIDGFGLIAFASLLPMMFVMVYG MVVT >Mature_243_residues TAVLVLFRAMLGSLRDLLPIVAVIAFFQLAVLQEPLPHLLSILTGLVLVVFGLTFFIFGLEMGLFPIGESMAQAFARKGS VFWLLTFAFCLGFGTTIAEPALTAVAAEAAEVAAEGGVIPNSLDEMEQYADGLRFTVALSVGIAILLGVLRILKGWPIQY MIIGGYIGVVVLTAFAPENIIGIAYDSGGVTTSTITVPLVTALGVGLASAIKGRNPMIDGFGLIAFASLLPMMFVMVYGM VVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25682; Mature: 25551
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVLVLFRAMLGSLRDLLPIVAVIAFFQLAVLQEPLPHLLSILTGLVLVVFGLTFFIFG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LEMGLFPIGESMAQAFARKGSVFWLLTFAFCLGFGTTIAEPALTAVAAEAAEVAAEGGVI HHHCCHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC PNSLDEMEQYADGLRFTVALSVGIAILLGVLRILKGWPIQYMIIGGYIGVVVLTAFAPEN CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCC IIGIAYDSGGVTTSTITVPLVTALGVGLASAIKGRNPMIDGFGLIAFASLLPMMFVMVYG EEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MVVT HHCC >Mature Secondary Structure TAVLVLFRAMLGSLRDLLPIVAVIAFFQLAVLQEPLPHLLSILTGLVLVVFGLTFFIFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH LEMGLFPIGESMAQAFARKGSVFWLLTFAFCLGFGTTIAEPALTAVAAEAAEVAAEGGVI HHHCCHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC PNSLDEMEQYADGLRFTVALSVGIAILLGVLRILKGWPIQYMIIGGYIGVVVLTAFAPEN CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCC IIGIAYDSGGVTTSTITVPLVTALGVGLASAIKGRNPMIDGFGLIAFASLLPMMFVMVYG EEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MVVT HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA