Click here to switch to the map view.

The map label for this gene is oppA [H]

Identifier: 218708984

GI number: 218708984

Start: 1022061

End: 1023692

Strand: Direct

Name: oppA [H]

Synonym: VS_0990

Alternate gene names: 218708984

Gene position: 1022061-1023692 (Clockwise)

Preceding gene: 218708983

Following gene: 218708985

Centisome position: 30.98

GC content: 44.67

Gene sequence:

>1632_bases
ATGTACAAGAATAAAATCACTCAGGCCCTTCTTCTAGGTGCTGGTTTGGCAGTGGCTGCCACTTCTACTCTTTCTATCGC
TGCTGAAGTTCCAGCAGGTACAGAACTAGCAAAAGTTCAGGAACTTGTTCGCGGTAACGGTACTGAAGTTGCGACTATCG
ACCCACACAAATCTCAAGGTGTACCAGAATCTCACGTAATTCGTGATCTTCTAGAAGGTCTAGTGAACCAGGACGGTGAA
GGTAATACTATCCCTGGTGTTGCTGAGAGCTGGGAAACGACAGACAACAAAACATTCACTTTCCACCTACGCAAAGATGC
AAAATGGTCTAACGGCGATCCTGTAACAGCTGAAGATTTCGTTTACAGCTGGAAACGTGCAGTTGATCCTGCCACTGCTT
CTCCATACGCTTGGTACATGGAATATACCAAGATGGTGAATGCAAAAGACATCGTAGCGGGTAAGAAAGACAAGAGTGAG
CTAGGCGTTAAAGCTGTAGATGCAAACACACTTGTTGTTGAATTAGAAACAGCGGTACCATACTTCGTAATGATGATGGG
CCACACAACAGTGAAGCCAGTACACAAAGCAACTGTTGAAAAATTCGGTGACCAATGGACCAAGCCGGGTAACTTCGTAG
GTAACGGCGCATTCTCTGTTGATAAGTGGGTTGTTAACGAACGTCTAGTTCTAAAGCGTAACGACCAATACTGGAACAAC
GACAAAACTGTTCTAAACAAAGTAACCTTCCTACCAATCGAAAACCAAGTTGCGGAAATGAACCGCTTCCTATCTGGTGA
AATCGACTTCACAAATGAACTTCCAACTGAGCACTTCAAGCGTCTTAAGAAAGAGCACGCAGAAGACGTATCTGTAGCTG
GTAACTTGTGTACTTACTACTACATCTTCAACACGAAGAAAGCTCCATTTGATGACGTTCGCGTACGTAAGGCTATCTCT
TACGCAATTGACCGTGACATCGTGACTGGCGCTATCTTAGCGCAAGGTCAAAAACCAGCGTATTTCCTGACGCCTGAAAT
CACGGCGGGCTTCGATCCTGAGCTTCCTCAGTACGGTACAATGTCTCAAAAAGAACGTAACGTAGAAGCGGCACGTCTTC
TTGAAGAAGCGGGCTACGGCAAAGACAATCCACTAAACTTCAACCTACTGTACAACACTTCTGAAAACCACAAGAAGATT
GCTGTAGCACTAGGTTCTATGTGGAAGAAAACACTGGGTCTTAAAGTTACACTTGAAAACCAAGAGTGGAAAACTTACCT
ATCTTCTAAAGATTCTGGTGACTTCGAAGTAGCTCGTGCTGGTTGGTGTGGTGACTACAATGAAGCGTCGTCATTCCTAA
CGCTAATGAAGAGTAACAACACTACCGGTGGTGTTCACTACGACAGCGCGGCTTACGATCAAATCATTGATAAAGCACTG
AACTCGACTTCAGAAGAAGAGCGTAAAGCACTTTACCTTGAAGCTGAGGCGCTAATGGCTAACGATATGCCTATCGCACC
TATCTACCAATACGTGAAATCACGTCTACTAAATCCGCACGTTGGTGGCTTCCCTACTAATAACGCGGAAGATAAGATCT
TCTCGAAAGACTTATACATCAAGGCTCAATAA

Upstream 100 bases:

>100_bases
TTATGCTTATATTTTAAGCTAAATAAATCTAAATCACTGCCGTTCAGTGAACTTAGCAAAGAAGTCATGGATGCAATACG
AAAAACTTGGAGTTTATTAA

Downstream 100 bases:

>100_bases
GCTTCGATTCTAAAAGTTAATATAACTATAACGATACAGACACTACATGCGTAATACGCGCATGTAGCGTCTTTCTAATT
TTAATTGTCACAGACTGAAA

Product: periplasmic oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MYKNKITQALLLGAGLAVAATSTLSIAAEVPAGTELAKVQELVRGNGTEVATIDPHKSQGVPESHVIRDLLEGLVNQDGE
GNTIPGVAESWETTDNKTFTFHLRKDAKWSNGDPVTAEDFVYSWKRAVDPATASPYAWYMEYTKMVNAKDIVAGKKDKSE
LGVKAVDANTLVVELETAVPYFVMMMGHTTVKPVHKATVEKFGDQWTKPGNFVGNGAFSVDKWVVNERLVLKRNDQYWNN
DKTVLNKVTFLPIENQVAEMNRFLSGEIDFTNELPTEHFKRLKKEHAEDVSVAGNLCTYYYIFNTKKAPFDDVRVRKAIS
YAIDRDIVTGAILAQGQKPAYFLTPEITAGFDPELPQYGTMSQKERNVEAARLLEEAGYGKDNPLNFNLLYNTSENHKKI
AVALGSMWKKTLGLKVTLENQEWKTYLSSKDSGDFEVARAGWCGDYNEASSFLTLMKSNNTTGGVHYDSAAYDQIIDKAL
NSTSEEERKALYLEAEALMANDMPIAPIYQYVKSRLLNPHVGGFPTNNAEDKIFSKDLYIKAQ

Sequences:

>Translated_543_residues
MYKNKITQALLLGAGLAVAATSTLSIAAEVPAGTELAKVQELVRGNGTEVATIDPHKSQGVPESHVIRDLLEGLVNQDGE
GNTIPGVAESWETTDNKTFTFHLRKDAKWSNGDPVTAEDFVYSWKRAVDPATASPYAWYMEYTKMVNAKDIVAGKKDKSE
LGVKAVDANTLVVELETAVPYFVMMMGHTTVKPVHKATVEKFGDQWTKPGNFVGNGAFSVDKWVVNERLVLKRNDQYWNN
DKTVLNKVTFLPIENQVAEMNRFLSGEIDFTNELPTEHFKRLKKEHAEDVSVAGNLCTYYYIFNTKKAPFDDVRVRKAIS
YAIDRDIVTGAILAQGQKPAYFLTPEITAGFDPELPQYGTMSQKERNVEAARLLEEAGYGKDNPLNFNLLYNTSENHKKI
AVALGSMWKKTLGLKVTLENQEWKTYLSSKDSGDFEVARAGWCGDYNEASSFLTLMKSNNTTGGVHYDSAAYDQIIDKAL
NSTSEEERKALYLEAEALMANDMPIAPIYQYVKSRLLNPHVGGFPTNNAEDKIFSKDLYIKAQ
>Mature_543_residues
MYKNKITQALLLGAGLAVAATSTLSIAAEVPAGTELAKVQELVRGNGTEVATIDPHKSQGVPESHVIRDLLEGLVNQDGE
GNTIPGVAESWETTDNKTFTFHLRKDAKWSNGDPVTAEDFVYSWKRAVDPATASPYAWYMEYTKMVNAKDIVAGKKDKSE
LGVKAVDANTLVVELETAVPYFVMMMGHTTVKPVHKATVEKFGDQWTKPGNFVGNGAFSVDKWVVNERLVLKRNDQYWNN
DKTVLNKVTFLPIENQVAEMNRFLSGEIDFTNELPTEHFKRLKKEHAEDVSVAGNLCTYYYIFNTKKAPFDDVRVRKAIS
YAIDRDIVTGAILAQGQKPAYFLTPEITAGFDPELPQYGTMSQKERNVEAARLLEEAGYGKDNPLNFNLLYNTSENHKKI
AVALGSMWKKTLGLKVTLENQEWKTYLSSKDSGDFEVARAGWCGDYNEASSFLTLMKSNNTTGGVHYDSAAYDQIIDKAL
NSTSEEERKALYLEAEALMANDMPIAPIYQYVKSRLLNPHVGGFPTNNAEDKIFSKDLYIKAQ

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=537, Percent_Identity=52.3277467411546, Blast_Score=585, Evalue=1e-168,
Organism=Escherichia coli, GI87081878, Length=523, Percent_Identity=49.7131931166348, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1789397, Length=518, Percent_Identity=43.050193050193, Blast_Score=432, Evalue=1e-122,
Organism=Escherichia coli, GI1789966, Length=477, Percent_Identity=24.3186582809224, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787762, Length=530, Percent_Identity=23.7735849056604, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1789887, Length=507, Percent_Identity=25.8382642998028, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787052, Length=533, Percent_Identity=23.0769230769231, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60501; Mature: 60501

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKNKITQALLLGAGLAVAATSTLSIAAEVPAGTELAKVQELVRGNGTEVATIDPHKSQG
CCHHHHHHHHHHHCCHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
VPESHVIRDLLEGLVNQDGEGNTIPGVAESWETTDNKTFTFHLRKDAKWSNGDPVTAEDF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHH
VYSWKRAVDPATASPYAWYMEYTKMVNAKDIVAGKKDKSELGVKAVDANTLVVELETAVP
HHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHCCEEEECCCEEEEEEEHHCC
YFVMMMGHTTVKPVHKATVEKFGDQWTKPGNFVGNGAFSVDKWVVNERLVLKRNDQYWNN
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHCCEEEEECCCCCCCC
DKTVLNKVTFLPIENQVAEMNRFLSGEIDFTNELPTEHFKRLKKEHAEDVSVAGNLCTYY
CCEEEHEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCEEEEE
YIFNTKKAPFDDVRVRKAISYAIDRDIVTGAILAQGQKPAYFLTPEITAGFDPELPQYGT
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
MSQKERNVEAARLLEEAGYGKDNPLNFNLLYNTSENHKKIAVALGSMWKKTLGLKVTLEN
CCHHHHCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCEEEEECC
QEWKTYLSSKDSGDFEVARAGWCGDYNEASSFLTLMKSNNTTGGVHYDSAAYDQIIDKAL
CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHEEEEECCCCCCCEEECHHHHHHHHHHHH
NSTSEEERKALYLEAEALMANDMPIAPIYQYVKSRLLNPHVGGFPTNNAEDKIFSKDLYI
CCCCHHHHHEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEE
KAQ
EEC
>Mature Secondary Structure
MYKNKITQALLLGAGLAVAATSTLSIAAEVPAGTELAKVQELVRGNGTEVATIDPHKSQG
CCHHHHHHHHHHHCCHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
VPESHVIRDLLEGLVNQDGEGNTIPGVAESWETTDNKTFTFHLRKDAKWSNGDPVTAEDF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHH
VYSWKRAVDPATASPYAWYMEYTKMVNAKDIVAGKKDKSELGVKAVDANTLVVELETAVP
HHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHCCEEEECCCEEEEEEEHHCC
YFVMMMGHTTVKPVHKATVEKFGDQWTKPGNFVGNGAFSVDKWVVNERLVLKRNDQYWNN
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHCCEEEEECCCCCCCC
DKTVLNKVTFLPIENQVAEMNRFLSGEIDFTNELPTEHFKRLKKEHAEDVSVAGNLCTYY
CCEEEHEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCEEEEE
YIFNTKKAPFDDVRVRKAISYAIDRDIVTGAILAQGQKPAYFLTPEITAGFDPELPQYGT
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
MSQKERNVEAARLLEEAGYGKDNPLNFNLLYNTSENHKKIAVALGSMWKKTLGLKVTLEN
CCHHHHCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCEEEEECC
QEWKTYLSSKDSGDFEVARAGWCGDYNEASSFLTLMKSNNTTGGVHYDSAAYDQIIDKAL
CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHEEEEECCCCCCCEEECHHHHHHHHHHHH
NSTSEEERKALYLEAEALMANDMPIAPIYQYVKSRLLNPHVGGFPTNNAEDKIFSKDLYI
CCCCHHHHHEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEE
KAQ
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]