Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 218708985

GI number: 218708985

Start: 1023803

End: 1024723

Strand: Direct

Name: oppB [H]

Synonym: VS_0991

Alternate gene names: 218708985

Gene position: 1023803-1024723 (Clockwise)

Preceding gene: 218708984

Following gene: 218708986

Centisome position: 31.03

GC content: 44.41

Gene sequence:

>921_bases
ATGCTTAAATTCATTATGAAAAGGATATTTGAAGCGATTCCAACGATGTTGGTGTTGATCACTATATCTTTCTTTCTCAT
GCGTTTCGCACCGGGTAACCCGTTTTCAAGCGAGCGTCCATTACCGCCAGAAGTTATGGCTAACATCGAAGCTAAATACG
GCTTAGATAAACCAGTATTTGAACAGTACACCACGTACTTAACCAACATCCTTCAGGGTGATTTTGGTCCATCTTTCAAA
TATCAAGATTACACAGTAAATGAGCTGATTGCTGTAGCACTTCCAGTATCTGCGAAGGTAGGCTTCGTTGCCTTTATCTT
TACGCTAATTATGGGGGTCACCGTCGGTACTATAGCCGCGTTGAAGCACAATACCTGGGTCGACTACACCATAATGTCGA
CAGCCATGCTCGGGGTGGTGATGCCATCCTTCGTATTGGCACCAGCGCTTATTTACCTTTTCTCCCTGCACTGGAATATA
TTCCCAGCAGGTGGTTGGCATGGCGGCACCTTCGCGTACATTGTGCTACCTGTTATTGCGATGTCTCTTCTATATGTAGC
TACCTTTGCTCGTATCACTCGCGGTAGCATGATTGAAACTCTAAACAGTAACTTTATCCGTACTGCTCGTGCTAAAGGCC
TAAGTTACCGTTATATCGTTCTTAAACATGCGCTTAAGCCAGCAATGCTACCTGTTGTTTCATATATGGGGCCTGCGTTC
GTAGGTATCATCACAGGTTCAGTTGTTGTTGAAACCATCTTCGGCCTACCGGGTATCGGTAAGCTGTTTGTTAACGCCGC
GTTTAACCGTGACTACTCGCTAGTAATGGGTGTAACCATCTTGATTGGTTTCCTATTCATCTTGTTCAACGCAATTGTTG
ATATTTTGCTAGCGCTGATTGACCCGAAAATTCGCTACTAA

Upstream 100 bases:

>100_bases
TAAAAGTTAATATAACTATAACGATACAGACACTACATGCGTAATACGCGCATGTAGCGTCTTTCTAATTTTAATTGTCA
CAGACTGAAAGAGTGAGTTT

Downstream 100 bases:

>100_bases
CAGGGACGCATGGTTATGTTGAAGAAAAAAGAAAATTTAGAAGCGATCGAAAAGTTCTCTGAGAGCTTAGAGATTGAAGG
TCGTAGTTTGTGGCAGGACG

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIMKRIFEAIPTMLVLITISFFLMRFAPGNPFSSERPLPPEVMANIEAKYGLDKPVFEQYTTYLTNILQGDFGPSFK
YQDYTVNELIAVALPVSAKVGFVAFIFTLIMGVTVGTIAALKHNTWVDYTIMSTAMLGVVMPSFVLAPALIYLFSLHWNI
FPAGGWHGGTFAYIVLPVIAMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIVLKHALKPAMLPVVSYMGPAF
VGIITGSVVVETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLALIDPKIRY

Sequences:

>Translated_306_residues
MLKFIMKRIFEAIPTMLVLITISFFLMRFAPGNPFSSERPLPPEVMANIEAKYGLDKPVFEQYTTYLTNILQGDFGPSFK
YQDYTVNELIAVALPVSAKVGFVAFIFTLIMGVTVGTIAALKHNTWVDYTIMSTAMLGVVMPSFVLAPALIYLFSLHWNI
FPAGGWHGGTFAYIVLPVIAMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIVLKHALKPAMLPVVSYMGPAF
VGIITGSVVVETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLALIDPKIRY
>Mature_306_residues
MLKFIMKRIFEAIPTMLVLITISFFLMRFAPGNPFSSERPLPPEVMANIEAKYGLDKPVFEQYTTYLTNILQGDFGPSFK
YQDYTVNELIAVALPVSAKVGFVAFIFTLIMGVTVGTIAALKHNTWVDYTIMSTAMLGVVMPSFVLAPALIYLFSLHWNI
FPAGGWHGGTFAYIVLPVIAMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIVLKHALKPAMLPVVSYMGPAF
VGIITGSVVVETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLALIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=66.8831168831169, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.3195266272189, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=34.4155844155844, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.9032258064516, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=28.9156626506024, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.9005524861878, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.4725274725275, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33886

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIMKRIFEAIPTMLVLITISFFLMRFAPGNPFSSERPLPPEVMANIEAKYGLDKPVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCCHHH
EQYTTYLTNILQGDFGPSFKYQDYTVNELIAVALPVSAKVGFVAFIFTLIMGVTVGTIAA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LKHNTWVDYTIMSTAMLGVVMPSFVLAPALIYLFSLHWNIFPAGGWHGGTFAYIVLPVIA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH
MSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIVLKHALKPAMLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVVETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLALI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFIMKRIFEAIPTMLVLITISFFLMRFAPGNPFSSERPLPPEVMANIEAKYGLDKPVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCCHHH
EQYTTYLTNILQGDFGPSFKYQDYTVNELIAVALPVSAKVGFVAFIFTLIMGVTVGTIAA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LKHNTWVDYTIMSTAMLGVVMPSFVLAPALIYLFSLHWNIFPAGGWHGGTFAYIVLPVIA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHH
MSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIVLKHALKPAMLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVVETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLALI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]