| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708939
Identifier: 218708939
GI number: 218708939
Start: 970141
End: 971142
Strand: Reverse
Name: 218708939
Synonym: VS_0941
Alternate gene names: NA
Gene position: 971142-970141 (Counterclockwise)
Preceding gene: 218708940
Following gene: 218708935
Centisome position: 29.43
GC content: 46.81
Gene sequence:
>1002_bases ATGGATCGTCGCGTTATCTCAAGCTTGCTCGTACGTTCAACACTTTTGTGTCTAACAATGGTGCTAGCTGGATGTTTCGA TGACAGCCCACAGAACTATTTCGACGACTATCAGACCAAAATCGCCAACGTGCAAGAGACTGACGAGATACAGGAAGACT GGGAGCTCAACAGCTTACCGAGAAAGCGAGAACTGTTTATTGAAGTTCCTTCGCTCTCTATCGGGCTTATCGACAGCTAT CAACTTCGACAATGCGGATTATTCAACCTGATTGCAGAAAGAAACTCCGTACTTGGAAAAGTCGCCGACGAGTTCCGAAA TTACGATTATCAAGTCGCTCTACTGGAAGGTGTTGGTCAATGTTTATCTAATAACGAATTAGATCCTGAGATCGTAGAAT TACTCAGAGAAATCGAGCAACAAAAACTCGCACAATTTCCACTGCACCAATGGAATCTCATCTATGCCAGTGAAGCGATG CAGTCGCAAATGCGTGGTAGCCAGTGGTTACGTGCCGATATTGGCGAACAAGTACGACAGACAAGTGACGCGCTAGAGCA CATAAATCAAGCGTTAAACACACCGCTCGTTTCCGGCAAGACTACTGAGGTTCAAGAAGGATTAGAGAAGAGTTCGACGC TTGGGGATTTGTACTACTCACTATCTCGTGCTTCGGCAGAGCTTGATACCATCACCCAGCAGCTGACTACTTTTGACGCC AACATCATCTGTGGGAAGCAACGAGACACGACTAAGTTTCGCTATCTCAACAATGTGTTCGAACAACAGTATATTGACAA GGTTCAGCCTTACATGGCGCAATTGGATGGCTACTATCAGCACCTAGCCCCCCAACTTGCTATGTTTGACGCACAGCCTG AGCTACACAGTTATCACTTTCCCATCAAAGATGCGCATCAAGCCTTTCGATCATCCACTCGGCGCCATGTCGACTATTGG CAACAGCTGTTTAAGCGCTGCGGACGCAAGGTTGGGCGTTAA
Upstream 100 bases:
>100_bases TCAGCTAAAGGCCTTGTGACTGTAATAGAGTCATCGAATACTGAAGTGAGTGGTCACTTCTTTAATTTCGATGGTAGCGA AATAGACTGGTAGCGATCAC
Downstream 100 bases:
>100_bases TTCCAGTATCGCCAATAAACAGCGGTTTGCTCTCAGTTCCTAGCTTTTAGTGCCTTTCTTAGCATACGTCCCTTTTTTGG CATACGTACCTTTGTTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MDRRVISSLLVRSTLLCLTMVLAGCFDDSPQNYFDDYQTKIANVQETDEIQEDWELNSLPRKRELFIEVPSLSIGLIDSY QLRQCGLFNLIAERNSVLGKVADEFRNYDYQVALLEGVGQCLSNNELDPEIVELLREIEQQKLAQFPLHQWNLIYASEAM QSQMRGSQWLRADIGEQVRQTSDALEHINQALNTPLVSGKTTEVQEGLEKSSTLGDLYYSLSRASAELDTITQQLTTFDA NIICGKQRDTTKFRYLNNVFEQQYIDKVQPYMAQLDGYYQHLAPQLAMFDAQPELHSYHFPIKDAHQAFRSSTRRHVDYW QQLFKRCGRKVGR
Sequences:
>Translated_333_residues MDRRVISSLLVRSTLLCLTMVLAGCFDDSPQNYFDDYQTKIANVQETDEIQEDWELNSLPRKRELFIEVPSLSIGLIDSY QLRQCGLFNLIAERNSVLGKVADEFRNYDYQVALLEGVGQCLSNNELDPEIVELLREIEQQKLAQFPLHQWNLIYASEAM QSQMRGSQWLRADIGEQVRQTSDALEHINQALNTPLVSGKTTEVQEGLEKSSTLGDLYYSLSRASAELDTITQQLTTFDA NIICGKQRDTTKFRYLNNVFEQQYIDKVQPYMAQLDGYYQHLAPQLAMFDAQPELHSYHFPIKDAHQAFRSSTRRHVDYW QQLFKRCGRKVGR >Mature_333_residues MDRRVISSLLVRSTLLCLTMVLAGCFDDSPQNYFDDYQTKIANVQETDEIQEDWELNSLPRKRELFIEVPSLSIGLIDSY QLRQCGLFNLIAERNSVLGKVADEFRNYDYQVALLEGVGQCLSNNELDPEIVELLREIEQQKLAQFPLHQWNLIYASEAM QSQMRGSQWLRADIGEQVRQTSDALEHINQALNTPLVSGKTTEVQEGLEKSSTLGDLYYSLSRASAELDTITQQLTTFDA NIICGKQRDTTKFRYLNNVFEQQYIDKVQPYMAQLDGYYQHLAPQLAMFDAQPELHSYHFPIKDAHQAFRSSTRRHVDYW QQLFKRCGRKVGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38512; Mature: 38512
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRRVISSLLVRSTLLCLTMVLAGCFDDSPQNYFDDYQTKIANVQETDEIQEDWELNSLP CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC RKRELFIEVPSLSIGLIDSYQLRQCGLFNLIAERNSVLGKVADEFRNYDYQVALLEGVGQ CCHHEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CLSNNELDPEIVELLREIEQQKLAQFPLHQWNLIYASEAMQSQMRGSQWLRADIGEQVRQ HHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSDALEHINQALNTPLVSGKTTEVQEGLEKSSTLGDLYYSLSRASAELDTITQQLTTFDA HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NIICGKQRDTTKFRYLNNVFEQQYIDKVQPYMAQLDGYYQHLAPQLAMFDAQPELHSYHF CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC PIKDAHQAFRSSTRRHVDYWQQLFKRCGRKVGR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDRRVISSLLVRSTLLCLTMVLAGCFDDSPQNYFDDYQTKIANVQETDEIQEDWELNSLP CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC RKRELFIEVPSLSIGLIDSYQLRQCGLFNLIAERNSVLGKVADEFRNYDYQVALLEGVGQ CCHHEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CLSNNELDPEIVELLREIEQQKLAQFPLHQWNLIYASEAMQSQMRGSQWLRADIGEQVRQ HHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSDALEHINQALNTPLVSGKTTEVQEGLEKSSTLGDLYYSLSRASAELDTITQQLTTFDA HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NIICGKQRDTTKFRYLNNVFEQQYIDKVQPYMAQLDGYYQHLAPQLAMFDAQPELHSYHF CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC PIKDAHQAFRSSTRRHVDYWQQLFKRCGRKVGR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA