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The map label for this gene is 218708373

Identifier: 218708373

GI number: 218708373

Start: 328329

End: 328784

Strand: Direct

Name: 218708373

Synonym: VS_0333

Alternate gene names: NA

Gene position: 328329-328784 (Clockwise)

Preceding gene: 218708372

Following gene: 218708374

Centisome position: 9.95

GC content: 37.72

Gene sequence:

>456_bases
ATGCTGAATAACCTACAGCGCTCACGTTTTGTTATTTGGGTTGCGGTTATTCTTTTTCTCGTTATGGGATTGCTTTCTGT
ATGGAGAACAGTAGAAGAAGAAGCAACGAACACGGCATTGATAGTTGCAAGTAAGCGAATTCTTGAGCAAGCTAATTTGT
TCAAACAACAGTATTTGTTATCTGGTGTGGAGCAAAAGAATGATTCGAAACCGGCAAAGACTTACAGCAGAACTGGGTGG
GTTATGCCAATTAAAGACTCGACTCGAAATTGCGGTTATTGGTTGGAGCAATTATATCCTAAGGGGCGTATTTTAGGTCT
CGGCGCTCCAAGTATTGAAGACAAAAGTGATAACATTCGTTTTCATTGCCGATATCATTATAGTGATAAGTATCAGATAG
ATATATTACTAAAAAAAGAAAGATTTAGTGTTAAAGTCAATATATTGGCCTTGTGA

Upstream 100 bases:

>100_bases
ACCTATTCTGTTGACCATCGTTGCGGGAATGGTGCTGATTTTAGCTCTGGGTATTTTCTTGCCGATGTGGGGAATGCTGG
ATGCAATCAAAGGTTAGAGG

Downstream 100 bases:

>100_bases
ACGTATTGACGCTGTTTTTATGGTTTTATACATATTCAAATGTATAATGCGCATTAGCAATTAGATGAGTAGGTAGAAAG
TGCTTAAAAATCAAAAGGGT

Product: MSHA biogenesis protein MshF

Products: NA

Alternate protein names: Msha Biogenesis Protein Mshf

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLNNLQRSRFVIWVAVILFLVMGLLSVWRTVEEEATNTALIVASKRILEQANLFKQQYLLSGVEQKNDSKPAKTYSRTGW
VMPIKDSTRNCGYWLEQLYPKGRILGLGAPSIEDKSDNIRFHCRYHYSDKYQIDILLKKERFSVKVNILAL

Sequences:

>Translated_151_residues
MLNNLQRSRFVIWVAVILFLVMGLLSVWRTVEEEATNTALIVASKRILEQANLFKQQYLLSGVEQKNDSKPAKTYSRTGW
VMPIKDSTRNCGYWLEQLYPKGRILGLGAPSIEDKSDNIRFHCRYHYSDKYQIDILLKKERFSVKVNILAL
>Mature_151_residues
MLNNLQRSRFVIWVAVILFLVMGLLSVWRTVEEEATNTALIVASKRILEQANLFKQQYLLSGVEQKNDSKPAKTYSRTGW
VMPIKDSTRNCGYWLEQLYPKGRILGLGAPSIEDKSDNIRFHCRYHYSDKYQIDILLKKERFSVKVNILAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17555; Mature: 17555

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNLQRSRFVIWVAVILFLVMGLLSVWRTVEEEATNTALIVASKRILEQANLFKQQYLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH
SGVEQKNDSKPAKTYSRTGWVMPIKDSTRNCGYWLEQLYPKGRILGLGAPSIEDKSDNIR
HHHHCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEE
FHCRYHYSDKYQIDILLKKERFSVKVNILAL
EEEEEECCCCEEEEEEEECCCEEEEEEEEEC
>Mature Secondary Structure
MLNNLQRSRFVIWVAVILFLVMGLLSVWRTVEEEATNTALIVASKRILEQANLFKQQYLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH
SGVEQKNDSKPAKTYSRTGWVMPIKDSTRNCGYWLEQLYPKGRILGLGAPSIEDKSDNIR
HHHHCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEE
FHCRYHYSDKYQIDILLKKERFSVKVNILAL
EEEEEECCCCEEEEEEEECCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA