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The map label for this gene is tapC [H]

Identifier: 218708372

GI number: 218708372

Start: 327102

End: 328325

Strand: Direct

Name: tapC [H]

Synonym: VS_0332

Alternate gene names: 218708372

Gene position: 327102-328325 (Clockwise)

Preceding gene: 218708371

Following gene: 218708373

Centisome position: 9.91

GC content: 42.89

Gene sequence:

>1224_bases
ATGCCAACTTATCGTTATGTAGGTCGCAGTTCTGATGGCAGTCAAGTGACAGGTCAGTTGGATGCGAATAACGAAGATCT
TGCTGCTGACAGTTTGATGAGTAAAGGGATCATTCCAACTTCGATTAAACTTGGAAAAAGTGGAGGTTCAATCTTGGATA
TGGATGTATCCAGTCTGTTCTCCCCGAATGTGCCTTTAGAGGTGTTGGTTCTGTTTTGCCGACAGTTGTATAGCTTAACT
AAGGCGGGCGTTCCGCTATTAAGATCGATGAAAGGGTTAACTCAGCATTGTGAAAATAAGCAACTGAAAGTAGCACTTGA
AGAAGTGGTCGCTGAGCTTACAAATGGTCGTGGATTAGCGGCGTCGATGCAAATGCACCCTAAGGTATTTAGTCCATTGT
TTGTATCGATGATCAGTGTTGGTGAAAATACCGGTCGTTTAGATCAGGCATTGTTACAACTGGCTGGATACTACGAACAA
GAGGTTGAAACTCGAAAGCGAATTAAAACGGCAATGCGTTACCCAACGTTCGTAATTACTTTTATTACAATCGCTATGTT
TGTCTTGAATATATTTGTGATTCCTCAGTTTTCAAGTATGTTCGCGCGTTTTGGCGTCAACTTGCCGCTTCCAACCCGTA
TTTTAATGGGGATGTCTGAGTTTTTTGTTAATTACTGGGGGTTAATGCTTGGGTTAATCTTTGGTCTTATTTTTGCTTTT
AAAGCATGGGTTAAGACAGATAAAGGGTGGGAAAAGTGGGATCGGCTGCGCTTAAAAATGCCAGTGATTGGTGGAGTGGT
CAATCGAGCTCTATTGTCGCGCTTCTCACGTACTTTTGCTTTGATGCTAAAAGCTGGCGTACCACTTAACCAATCGTTAT
CGCTATCGGCTGAAGCTCTGGACAATCGTTTTTTAGAACTTCGAGTTCAAGGCATGAAATCGGCAATAGAAGCGGGCAGC
ACAGTCTCTTCAACCGCGATTAACAGCGAAATTTTTACACCACTCGTGATACAAATGATTTCTGTGGGTGAAGAAACGGG
TCGTATTGATGAATTGCTGCTCGAAGTTGCGGATTTTTACGACCGAGAGGTTGATTACGATCTAAAAACGTTAACCGCTA
GAATAGAACCTATTCTGTTGACCATCGTTGCGGGAATGGTGCTGATTTTAGCTCTGGGTATTTTCTTGCCGATGTGGGGA
ATGCTGGATGCAATCAAAGGTTAG

Upstream 100 bases:

>100_bases
GGCCATGCAGGGTGTTGTGAGCTTCGATGAGGTAATGAACCTTGGCGAAGGCGATGCTTCTGGTGCCACTGATCCAATTT
ATCTGTAGGGGTAGAGTGAA

Downstream 100 bases:

>100_bases
AGGATGCTGAATAACCTACAGCGCTCACGTTTTGTTATTTGGGTTGCGGTTATTCTTTTTCTCGTTATGGGATTGCTTTC
TGTATGGAGAACAGTAGAAG

Product: MSHA biogenesis protein MshG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MPTYRYVGRSSDGSQVTGQLDANNEDLAADSLMSKGIIPTSIKLGKSGGSILDMDVSSLFSPNVPLEVLVLFCRQLYSLT
KAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLAASMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQ
EVETRKRIKTAMRYPTFVITFITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYWGLMLGLIFGLIFAF
KAWVKTDKGWEKWDRLRLKMPVIGGVVNRALLSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLELRVQGMKSAIEAGS
TVSSTAINSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGMVLILALGIFLPMWG
MLDAIKG

Sequences:

>Translated_407_residues
MPTYRYVGRSSDGSQVTGQLDANNEDLAADSLMSKGIIPTSIKLGKSGGSILDMDVSSLFSPNVPLEVLVLFCRQLYSLT
KAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLAASMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQ
EVETRKRIKTAMRYPTFVITFITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYWGLMLGLIFGLIFAF
KAWVKTDKGWEKWDRLRLKMPVIGGVVNRALLSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLELRVQGMKSAIEAGS
TVSSTAINSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGMVLILALGIFLPMWG
MLDAIKG
>Mature_406_residues
PTYRYVGRSSDGSQVTGQLDANNEDLAADSLMSKGIIPTSIKLGKSGGSILDMDVSSLFSPNVPLEVLVLFCRQLYSLTK
AGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLAASMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQE
VETRKRIKTAMRYPTFVITFITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYWGLMLGLIFGLIFAFK
AWVKTDKGWEKWDRLRLKMPVIGGVVNRALLSRFSRTFALMLKAGVPLNQSLSLSAEALDNRFLELRVQGMKSAIEAGST
VSSTAINSEIFTPLVIQMISVGEETGRIDELLLEVADFYDREVDYDLKTLTARIEPILLTIVAGMVLILALGIFLPMWGM
LDAIKG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=396, Percent_Identity=26.7676767676768, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1786295, Length=408, Percent_Identity=25, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45108; Mature: 44977

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYRYVGRSSDGSQVTGQLDANNEDLAADSLMSKGIIPTSIKLGKSGGSILDMDVSSLF
CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEECCHHHHC
SPNVPLEVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
ASMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYWGLMLGLIFGLIFAF
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAWVKTDKGWEKWDRLRLKMPVIGGVVNRALLSRFSRTFALMLKAGVPLNQSLSLSAEAL
HHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
DNRFLELRVQGMKSAIEAGSTVSSTAINSEIFTPLVIQMISVGEETGRIDELLLEVADFY
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
DREVDYDLKTLTARIEPILLTIVAGMVLILALGIFLPMWGMLDAIKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTYRYVGRSSDGSQVTGQLDANNEDLAADSLMSKGIIPTSIKLGKSGGSILDMDVSSLF
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEECCHHHHC
SPNVPLEVLVLFCRQLYSLTKAGVPLLRSMKGLTQHCENKQLKVALEEVVAELTNGRGLA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
ASMQMHPKVFSPLFVSMISVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FITIAMFVLNIFVIPQFSSMFARFGVNLPLPTRILMGMSEFFVNYWGLMLGLIFGLIFAF
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAWVKTDKGWEKWDRLRLKMPVIGGVVNRALLSRFSRTFALMLKAGVPLNQSLSLSAEAL
HHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
DNRFLELRVQGMKSAIEAGSTVSSTAINSEIFTPLVIQMISVGEETGRIDELLLEVADFY
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
DREVDYDLKTLTARIEPILLTIVAGMVLILALGIFLPMWGMLDAIKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]