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The map label for this gene is ygcR [H]

Identifier: 218690890

GI number: 218690890

Start: 3151573

End: 3152355

Strand: Reverse

Name: ygcR [H]

Synonym: ECED1_3219

Alternate gene names: 218690890

Gene position: 3152355-3151573 (Counterclockwise)

Preceding gene: 218690891

Following gene: 218690889

Centisome position: 60.51

GC content: 56.96

Gene sequence:

>783_bases
GTGCGAATGAACATTCTGTTAGCGTTTAAAGCCGAACCGGATGCCGGAATGCTGGCGGAAAAAGAGTGGCAGGCGGCTCA
GGGTAATAGCGGACCGGATGTTTCGCTTCTGCGAAGTTTACTCGGTGCCGATGAACAGGCTGCCGCCGCGCTGCTGTTGG
CGCAGAGAAAAAACGGTACGCCGATGTCTTTAACCGCGTTGAGCATGGGGGATGAACGGGCGTTGCACTGGCTGCGCTAT
CTCATGGCACTTGGGTTTGAGGAAGCTGTATTGCTGGAGACGGCGGCAGATCTGCGCTTTGCGCCGGAATTTGTCGCTCG
CCATATTGCCGAATGGCAGTACCAGAATCCGCTGGATCTGATAATTACTGGCTGCCAAAGCAGCGAAGGGCAGAATGGGC
AAACGCCATTTTTGCTGGCGGAAATGCTGGTCTGGCCCTGCTTCACCCAGGTGGAGCGCTTTACTCTCGACGCGCCGTTT
ATCACCCTCGAACAGCGTACTGAACATGGACTGCGCTGTTGCCGGGTTCGCTTGCCTGCGGTGATTGCCGTGCGTCAGTG
TGGTGAAGTGGCCTTGCCAGTACCGGGAATGCGCCAGCGAATGGCGGCGGGGAAAGCGGAGATTACCCGCGAAACTGTTG
CCGCGGAAGCGCCAGCGATACAGTGCCTGCAACTGGCAAGGCCAGAGCAACGACGCGGAGCGACGCTGATTGATGGGCAA
ACGGTAGCAGAAAAAGCGCAAAAGCTATGGCAGTACTATTTATGCCAAAGGATGCAGCCATGA

Upstream 100 bases:

>100_bases
TTGCTCCTGGCGGCAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACCAAAGCACTCCCGCTGGT
GGCGGCGGGAAATGTAGGAG

Downstream 100 bases:

>100_bases
ATATCGTACTTGTGACAATAAATCAGGACCATGCCGCAATAGCGAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTGTACC
CTGGCACACTGGCAAATAGA

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRMNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRY
LMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLDLIITGCQSSEGQNGQTPFLLAEMLVWPCFTQVERFTLDAPF
ITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRGATLIDGQ
TVAEKAQKLWQYYLCQRMQP

Sequences:

>Translated_260_residues
MRMNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRY
LMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLDLIITGCQSSEGQNGQTPFLLAEMLVWPCFTQVERFTLDAPF
ITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRGATLIDGQ
TVAEKAQKLWQYYLCQRMQP
>Mature_260_residues
MRMNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRY
LMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLDLIITGCQSSEGQNGQTPFLLAEMLVWPCFTQVERFTLDAPF
ITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRGATLIDGQ
TVAEKAQKLWQYYLCQRMQP

Specific function: May play a role in a redox process [H]

COG id: COG2086

COG function: function code C; Electron transfer flavoprotein, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF beta-subunit/fixA family [H]

Homologues:

Organism=Escherichia coli, GI87082158, Length=259, Percent_Identity=94.980694980695, Blast_Score=476, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014730
- InterPro:   IPR012255
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF [H]

EC number: NA

Molecular weight: Translated: 28893; Mature: 28893

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGT
CCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
PMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLDL
CEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHE
IITGCQSSEGQNGQTPFLLAEMLVWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPA
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
VIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRGATLIDGQ
HHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCEEECCH
TVAEKAQKLWQYYLCQRMQP
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRMNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGT
CCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
PMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLDL
CEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHE
IITGCQSSEGQNGQTPFLLAEMLVWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPA
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
VIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRGATLIDGQ
HHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCEEECCH
TVAEKAQKLWQYYLCQRMQP
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]