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The map label for this gene is ygcQ [H]

Identifier: 218690889

GI number: 218690889

Start: 3150716

End: 3151576

Strand: Reverse

Name: ygcQ [H]

Synonym: ECED1_3218

Alternate gene names: 218690889

Gene position: 3151576-3150716 (Counterclockwise)

Preceding gene: 218690890

Following gene: 218690884

Centisome position: 60.5

GC content: 55.28

Gene sequence:

>861_bases
ATGAATATCGTACTTGTGACAATAAATCAGGACCATGCCGCAATAGCGAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTG
TACCCTGGCACACTGGCAAATAGAACCACAGCCGATGATTGCGGAACAGGTGCTGGATGCGCTGGTGGAACAGTGGCAAC
GAACGCCTGCGGAGGTTGTCCTCTTTCCTCCGGGCGCGTTTGGCGATGAACTGGCTACCCGACTGGCCTGGCGTGTACAT
GGCGCCAGTATCTGTCAGGTGATTTCATTCGATATATCAACCGCAAGCGTGCGCAAATCTCACTGGGGAAATGCGCTAAC
GGCGACGTTGCAAACAGAAAAACGCCCGCTATGCCTTTCGCTGGCACGTCAGGCGGGAGCAGATAAAAACGCCACGTTGC
CCTCTGGGATGCAGCAACTGAACATTGTCCCCGGCGCGCTTCCAGACTGGCTTATCAGCGTCGAAAATCTGAAAAATGTT
ACCCGTGACCCATTAGCTGAGGCCAGACGGGTGCTGGTGGTGGGGCAGGGCGGAGAGGCAGATAACCAGGAAATCGCTAT
GCTGGCAGAAAAGATGGGAGCCGAAGTGGGCTACAGTCGGGCACGAGTGATGAACGGTGGCGTTGATGCCGAAAAAGTGA
TTGGTATTTCCGGACATCTGCTGGCACCTGAGGTGTGTATTGTTGTTGGCGCTTCCGGCGCAGCAGCGTTAATGGCGGGC
GTACGCAATAGCAAGTTTGTGGTGGCGATTAATCATGACGCCAGCGCGGCGGTATTTTCACAGGCAGATGTTGGCGTGGT
TGATGACTGGAAAGCGGTGCTGGAGGCACTGGTGACAACCATTCACGCAGATTGCCAATAA

Upstream 100 bases:

>100_bases
GGCCAGAGCAACGACGCGGAGCGACGCTGATTGATGGGCAAACGGTAGCAGAAAAAGCGCAAAAGCTATGGCAGTACTAT
TTATGCCAAAGGATGCAGCC

Downstream 100 bases:

>100_bases
CGTGCTGCCGGATGATCCTGCCGATGGTTCTGGGCTGGGGACTTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGG
CGCTGAATGTCGGATGTGGC

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNIVLVTINQDHAAIASWLAAQDFSGCTLAHWQIEPQPMIAEQVLDALVEQWQRTPAEVVLFPPGAFGDELATRLAWRVH
GASICQVISFDISTASVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLISVENLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKMGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ

Sequences:

>Translated_286_residues
MNIVLVTINQDHAAIASWLAAQDFSGCTLAHWQIEPQPMIAEQVLDALVEQWQRTPAEVVLFPPGAFGDELATRLAWRVH
GASICQVISFDISTASVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLISVENLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKMGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>Mature_286_residues
MNIVLVTINQDHAAIASWLAAQDFSGCTLAHWQIEPQPMIAEQVLDALVEQWQRTPAEVVLFPPGAFGDELATRLAWRVH
GASICQVISFDISTASVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLISVENLKNV
TRDPLAEARRVLVVGQGGEADNQEIAMLAEKMGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
VRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ

Specific function: May play a role in a redox process [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI4503607, Length=216, Percent_Identity=34.2592592592593, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI189181759, Length=216, Percent_Identity=34.2592592592593, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87082157, Length=286, Percent_Identity=92.6573426573427, Blast_Score=545, Evalue=1e-156,
Organism=Escherichia coli, GI1787990, Length=223, Percent_Identity=29.5964125560538, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786226, Length=120, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17506929, Length=219, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6325261, Length=244, Percent_Identity=27.4590163934426, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17136898, Length=218, Percent_Identity=34.4036697247706, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24652801, Length=218, Percent_Identity=34.4036697247706, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 30385; Mature: 30385

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVLVTINQDHAAIASWLAAQDFSGCTLAHWQIEPQPMIAEQVLDALVEQWQRTPAEVV
CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
LFPPGAFGDELATRLAWRVHGASICQVISFDISTASVRKSHWGNALTATLQTEKRPLCLS
EECCCCCHHHHHHHHHHHHCCHHHHHHHEECCCHHHHHHHHCCCEEEEEEECCCCCHHHH
LARQAGADKNATLPSGMQQLNIVPGALPDWLISVENLKNVTRDPLAEARRVLVVGQGGEA
HHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCC
DNQEIAMLAEKMGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
CCHHHHHHHHHHCHHCCCHHHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCHHHHHHC
VRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
CCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIVLVTINQDHAAIASWLAAQDFSGCTLAHWQIEPQPMIAEQVLDALVEQWQRTPAEVV
CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
LFPPGAFGDELATRLAWRVHGASICQVISFDISTASVRKSHWGNALTATLQTEKRPLCLS
EECCCCCHHHHHHHHHHHHCCHHHHHHHEECCCHHHHHHHHCCCEEEEEEECCCCCHHHH
LARQAGADKNATLPSGMQQLNIVPGALPDWLISVENLKNVTRDPLAEARRVLVVGQGGEA
HHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCC
DNQEIAMLAEKMGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAG
CCHHHHHHHHHHCHHCCCHHHHHCCCCCCHHHEEECCCCCCCCCEEEEEECCCHHHHHHC
VRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
CCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]