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The map label for this gene is ttdA [H]

Identifier: 218550515

GI number: 218550515

Start: 3294948

End: 3295847

Strand: Reverse

Name: ttdA [H]

Synonym: EFER_3209

Alternate gene names: 218550515

Gene position: 3295847-3294948 (Counterclockwise)

Preceding gene: 218550516

Following gene: 218550514

Centisome position: 71.83

GC content: 47.33

Gene sequence:

>900_bases
ATGAGCAAAAGCGAACAGATATCCCATATGACCAATATTATGGCCAGGTTTGTGGGATATACCGGCAAAGTACTGCCTGA
TGATGTCACCGCAAAACTGGAAGATTTACAGAAAAAAGAGACCAGCCAACTGGCGAATGTCATCTTTACCACCATGTTTG
ATAACCAGCGTCTGGCAAAAGAACTGGATCGTCCGTCTTGTCAGGATACCGGCGTAATCCAGTTTCTGGTGGAGTGTGGT
ACGAATTTTCCACTGATTGGCGAACTGGAAGCACTACTGCGTGAAGCGGTGATCAAAGCGACCGTTGACTCTCCACTACG
GCACAATAGCGTCGAAACATTTGATGAATACAACACCGGAAAAAACGTGGGTAAAGGTACGCCAACGGTGTTCTGGGAGA
TTGTTCCCAACTCTGATCAGTGCAGCATTTATACCTATATGGCTGGCGGTGGCTGCTCTTTGCCGGGTAAAGCGATGGTA
TTAATGCCGGGCGCAGGCTACGAAGGTGTGACGCGCTTTGTGCTGGATGTGATGACCAGTTACGGGCTAAATGCTTGTCC
GCCGCTGTTGGTAGGTGTTGGTGTGGCGACCTCTGTAGAAACGGCTGCATTGCTGTCGAAAAAAGCGCTGATGCGCCCGG
TTGGTTCTCATAATGAAAATGAACGGGCTGCATCACTGGAAAAAATGCTTGAAGAGGGCATTAATAAAATTGGATTAGGT
CCTCAGGGAATGTCTGGTAATACATCCGTGATGGGCGTGAATATTGAAAATACTGCACGTCATCCTTCCACAATTGGTGT
AGCAGTAAACGTTGGGTGCTGGTCGCACCGCAAAGGCCATATCGTTTTCGATAAAGATTTAAATTATACCATTACGTCTC
ATACAGGAGTGACTCTCTAA

Upstream 100 bases:

>100_bases
CCCCTGATTATCGTTTCAACCATTGTCAGCCTGATTTTGCTGCCAATTCTTTTCCCCTTTCACCCGTAATTAACGCAACT
GTCCTTTTCAAGGAGCAATT

Downstream 100 bases:

>100_bases
TGACTAAAAAAATCCTGACTACGCCAATTAAAGATGAAGACCTCGCAGATATTAAAGCGGGAGATATTATTTATCTCAAT
GGTCATATTGTAACGTGTCG

Product: tartrate dehydratase subunit alpha

Products: NA

Alternate protein names: L-TTD alpha [H]

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSKSEQISHMTNIMARFVGYTGKVLPDDVTAKLEDLQKKETSQLANVIFTTMFDNQRLAKELDRPSCQDTGVIQFLVECG
TNFPLIGELEALLREAVIKATVDSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMV
LMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPVGSHNENERAASLEKMLEEGINKIGLG
PQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHIVFDKDLNYTITSHTGVTL

Sequences:

>Translated_299_residues
MSKSEQISHMTNIMARFVGYTGKVLPDDVTAKLEDLQKKETSQLANVIFTTMFDNQRLAKELDRPSCQDTGVIQFLVECG
TNFPLIGELEALLREAVIKATVDSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMV
LMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPVGSHNENERAASLEKMLEEGINKIGLG
PQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHIVFDKDLNYTITSHTGVTL
>Mature_298_residues
SKSEQISHMTNIMARFVGYTGKVLPDDVTAKLEDLQKKETSQLANVIFTTMFDNQRLAKELDRPSCQDTGVIQFLVECGT
NFPLIGELEALLREAVIKATVDSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMVL
MPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPVGSHNENERAASLEKMLEEGINKIGLGP
QGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHIVFDKDLNYTITSHTGVTL

Specific function: Unknown

COG id: COG1951

COG function: function code C; Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789442, Length=298, Percent_Identity=55.0335570469799, Blast_Score=355, Evalue=2e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004646 [H]

Pfam domain/function: PF05681 Fumerase [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 32261; Mature: 32130

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSEQISHMTNIMARFVGYTGKVLPDDVTAKLEDLQKKETSQLANVIFTTMFDNQRLAK
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ELDRPSCQDTGVIQFLVECGTNFPLIGELEALLREAVIKATVDSPLRHNSVETFDEYNTG
HCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCC
KNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMVLMPGAGYEGVTRFVLDVMTS
CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
YGLNACPPLLVGVGVATSVETAALLSKKALMRPVGSHNENERAASLEKMLEEGINKIGLG
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHIVFDKDLNYTITSHTGVTL
CCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEECCCCCCC
>Mature Secondary Structure 
SKSEQISHMTNIMARFVGYTGKVLPDDVTAKLEDLQKKETSQLANVIFTTMFDNQRLAK
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ELDRPSCQDTGVIQFLVECGTNFPLIGELEALLREAVIKATVDSPLRHNSVETFDEYNTG
HCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHCCC
KNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMVLMPGAGYEGVTRFVLDVMTS
CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
YGLNACPPLLVGVGVATSVETAALLSKKALMRPVGSHNENERAASLEKMLEEGINKIGLG
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHIVFDKDLNYTITSHTGVTL
CCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]