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The map label for this gene is yqjH [H]

Identifier: 218550330

GI number: 218550330

Start: 3091927

End: 3092706

Strand: Reverse

Name: yqjH [H]

Synonym: EFER_3022

Alternate gene names: 218550330

Gene position: 3092706-3091927 (Counterclockwise)

Preceding gene: 218550332

Following gene: 218550329

Centisome position: 67.4

GC content: 51.03

Gene sequence:

>780_bases
ATGAATAACTCTCCCCGTTACCCACAGCGCGTTCGTAACGAATTGCGCTTCCGTGAACTGACCGTATTACGAATTGAACG
CATCAGTGTCTGTTTTCAGCGTATCGTCCTCGGCGGCGAGGCGCTGGACGGTTTTACATCGCACGGTTTTGATGATCACA
GCAAAGTCTTTTTCCCTGAACCGGGGACTCATTTTGTGCCGCCAACCGTCACCGACGACGGTATTATCTGGCCAGAAGGT
ACGCGCCCGGTTTCGCGTGACTACACACCGCTTTACGATGAGCAACGTCATGAACTGGCACTGGATTTCTTTATCCATAA
TGGCGGTGTAGCAAGCCGCTGGGCGATGCAGGCACAACCGGGCGATAAACTCACTATTGGTGGACCACGCGGATCGCTGC
TAGTGCCAGAGGATTACTCATATCAACTCTATGTTTGTGATGAATCAGGTATGCCCGCATTACGCCGTCGGCTGGAAATG
TTGAGTAAGCTTGCGGTCAAACCTAATATCACTGCGCTGGTGAGTGTGCAGGACAGAGCTTGTAAGGATTATCTTGCTCA
TCTTGAGGGGTTTAATATTGAATGGCTGGCGCATGATGAGCAGGCCGTAGATGCACGACTGGCACAGTTACAGATCCCGG
AAGATGACTACTTTATCTGGATCACAGGCGAAGGGAAGGTTGTCAAAAAACTCAGCCAGCGTTTTATGGGGGAACGTTAT
AACCAGCAATTAGTGCGTGCAGCTGCATACTGGCACGCTAAATTGCCTGACGCGCCGTAA

Upstream 100 bases:

>100_bases
TTTGAGCCATAAAAATTTCTTGCAATTAGCTTGATTAACAATCATTATCATTTGCGAGCTTTTTTTAGATATATCTGATT
ACTACCGAAAAGGCACAACA

Downstream 100 bases:

>100_bases
ACGTCTTGTACGGCCTTAGAAAACATTTAAATTCAATATATTGCAGTAATTTTGTAGGCCTGATAAGCGTAGCGCATCAG
GCTATATTACATTTTTCATT

Product: siderophore interacting protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNNSPRYPQRVRNELRFRELTVLRIERISVCFQRIVLGGEALDGFTSHGFDDHSKVFFPEPGTHFVPPTVTDDGIIWPEG
TRPVSRDYTPLYDEQRHELALDFFIHNGGVASRWAMQAQPGDKLTIGGPRGSLLVPEDYSYQLYVCDESGMPALRRRLEM
LSKLAVKPNITALVSVQDRACKDYLAHLEGFNIEWLAHDEQAVDARLAQLQIPEDDYFIWITGEGKVVKKLSQRFMGERY
NQQLVRAAAYWHAKLPDAP

Sequences:

>Translated_259_residues
MNNSPRYPQRVRNELRFRELTVLRIERISVCFQRIVLGGEALDGFTSHGFDDHSKVFFPEPGTHFVPPTVTDDGIIWPEG
TRPVSRDYTPLYDEQRHELALDFFIHNGGVASRWAMQAQPGDKLTIGGPRGSLLVPEDYSYQLYVCDESGMPALRRRLEM
LSKLAVKPNITALVSVQDRACKDYLAHLEGFNIEWLAHDEQAVDARLAQLQIPEDDYFIWITGEGKVVKKLSQRFMGERY
NQQLVRAAAYWHAKLPDAP
>Mature_259_residues
MNNSPRYPQRVRNELRFRELTVLRIERISVCFQRIVLGGEALDGFTSHGFDDHSKVFFPEPGTHFVPPTVTDDGIIWPEG
TRPVSRDYTPLYDEQRHELALDFFIHNGGVASRWAMQAQPGDKLTIGGPRGSLLVPEDYSYQLYVCDESGMPALRRRLEM
LSKLAVKPNITALVSVQDRACKDYLAHLEGFNIEWLAHDEQAVDARLAQLQIPEDDYFIWITGEGKVVKKLSQRFMGERY
NQQLVRAAAYWHAKLPDAP

Specific function: Unknown

COG id: COG2375

COG function: function code P; Siderophore-interacting protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Vibrio vibriobactin/vulbinactin utilization protein viuB [H]

Homologues:

Organism=Escherichia coli, GI1789450, Length=254, Percent_Identity=83.8582677165354, Blast_Score=455, Evalue=1e-129,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013113
- InterPro:   IPR017927
- InterPro:   IPR017938
- InterPro:   IPR007037 [H]

Pfam domain/function: PF08021 FAD_binding_9; PF04954 SIP [H]

EC number: NA

Molecular weight: Translated: 29630; Mature: 29630

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSPRYPQRVRNELRFRELTVLRIERISVCFQRIVLGGEALDGFTSHGFDDHSKVFFPE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCCEEEECC
PGTHFVPPTVTDDGIIWPEGTRPVSRDYTPLYDEQRHELALDFFIHNGGVASRWAMQAQP
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCC
GDKLTIGGPRGSLLVPEDYSYQLYVCDESGMPALRRRLEMLSKLAVKPNITALVSVQDRA
CCEEEECCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHH
CKDYLAHLEGFNIEWLAHDEQAVDARLAQLQIPEDDYFIWITGEGKVVKKLSQRFMGERY
HHHHHHHHCCCCEEEEECCHHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHH
NQQLVRAAAYWHAKLPDAP
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNSPRYPQRVRNELRFRELTVLRIERISVCFQRIVLGGEALDGFTSHGFDDHSKVFFPE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCCEEEECC
PGTHFVPPTVTDDGIIWPEGTRPVSRDYTPLYDEQRHELALDFFIHNGGVASRWAMQAQP
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCC
GDKLTIGGPRGSLLVPEDYSYQLYVCDESGMPALRRRLEMLSKLAVKPNITALVSVQDRA
CCEEEECCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHH
CKDYLAHLEGFNIEWLAHDEQAVDARLAQLQIPEDDYFIWITGEGKVVKKLSQRFMGERY
HHHHHHHHCCCCEEEEECCHHHHHHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHH
NQQLVRAAAYWHAKLPDAP
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]