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The map label for this gene is ybgQ [H]

Identifier: 218549720

GI number: 218549720

Start: 2456432

End: 2458969

Strand: Direct

Name: ybgQ [H]

Synonym: EFER_2397

Alternate gene names: 218549720

Gene position: 2456432-2458969 (Clockwise)

Preceding gene: 218549719

Following gene: 218549721

Centisome position: 53.53

GC content: 47.99

Gene sequence:

>2538_bases
ATGCAACCTACGTACTGGAATATAAGTAAGTTCAACCGAGGCGGCCTCCTGCCGCCTTATTTAAAATATTTATCAGGTAT
GGACACCGTGAATATTTACCGACTCTCTATTATTTTCTGTCTGGCGGCGGTAATACCTTCCGCTCTGGCAGTGGAGTTCA
ATCTTAACGTTCTTGATAAATCAATGCGCGACAGTATCGATTTATCGTTACTCAAAGAAAAAAATGCTATTGCTCCCGGT
GAATATTTTGTCAGTATCGTCATAAATAATAATCAAATCAGCAGTGGGCAAAAAATTCGCTGGCAGAAAGCAGGAGACCA
AATCAAGGCGTGTATAGATAGTTCTCTGATGGATAAATTTGGCCTGAAAGATGAAGTCCGCCAGTCATTACCGATAGTTA
ATAATTGTGTCGATTTTAAATCCAGGCCTGAGATTGTTTTCGTATTCGATCAAAGCAATCAACAGCTTAATATTACAATT
CCACAGGCCTGGCTTGCCTGGCACTCAGAAAACTGGACTCCGCCTTCAACATGGAATGCGGGTGTACCTGGTGTATTACT
GGATTACAACCTGTTTGCCAGCACGTATCGTCCACAAGAGGGGAGCAATAATACCAATTTAAATGCCTACGGCACTGCCG
GACTCAACGCTGGAGCGTGGCGACTGCGTAGTGATTACCAACTAAACCAGTCTGACAGCGGTGACCACCGCGACGAATCG
GCTATCATTTCGCGAACATATCTGTTTCGCCCCTTACCGCAACCAGGCGCACGCTTAACTCTCGGCGAAACGGATCTTAG
CTCTAATATTTTCGAAGGTTTCTCTTACACAGGCGCGGCGTTGACCAGTGATGATCGGATGTTGCCGTGGGAGTTACGGG
GGTACGCTCCACAAATCAGTGGCATCGCCCAAACCAATGCCACTGTCACCATCAGTCATAATGGTCGGGTGATATATCAG
AAGAAAGTGCCACCAGGCCCGTTTATTGTTGACGACCTCAATCAATCAGTACAAGGCACTCTGGATGTCAAAGTGACCGA
AGAAGATGGCCGGGTTAACAGTTTTCAGATTTCCGCTGCCTCTACCCCCTTCCTGACACGTCAAGGGCAAGTGCGCTATA
AACTGGCAGCCGGGCGCCCACGCGCTTCAATGTCACACCATACTGAAAATGAAACCTTTCTCAGTAGCGAAGCGTCCTGG
GGAGTTCTTTCCAATACTTCACTCTATGGTGGTATGCTCCTCTCCGGGGATGATTATCACTCCGGGGCGCTGGGTATCGG
GCAAAATATGCTCTGGCTGGGGGCGCTCTCGTTCGACGTGACCTGGGCCAAAAGTCAGTTTAATCAGCAAGAAGATGAGC
AAGGCTACAGTTATCGTGTTAACCACAGCAAACGAATAGATGCCACCGACAGTTTGCTCTCTTTAGCGGCTTACCGCTTT
TCTGATCGCCAATTTCATAGTTACGCCAATTATATTGATCATAAATATAATGATGCCGATACCCACGACGAAAAGCAGAC
CATTAGTATTTCTGCAAGCCAACCGATCACGCCACTAAATCTTAACCTTAACGTCAACCTGCTGCGTCAGAGATGGTGGA
ATGCCGATACCACTACAACTGCAAATATAACCGCCGGGTTTAATGTGGATATCGGTGACTGGAAAGATATTTCGGTCTCG
ACTTCATTTAACACCACCCATTACGAAGACAAAAAACGCGACAACCAGATTTACTTCTCGATCTCGCTACCTGTTGGTGA
AGGTGGCCGACTCGGCTATGACTTGCAAAACAGCAGCAACACCACCACACACCGCATGTCATGGAACGACACACTGGATG
AACACAATAGTTGGGGAATGTCCGCCGGGCTGCAATCAGATCGCCCCGATAATGGTGCGCAGGTCAGTGGCAATTACCAG
CATCTCAGTTCTGTCGGCGAATGGGATCTCACCGGAACATACGCTACTAATGATTACACTTCCGCCAGTTCCAGTTGGAG
TGGTTCTTTTACCGCCACGCAATATGGCGCAGCATTTCATCGCCGCAGCTCCACTAACGAACCGCGTTTAATGGTCAGTA
CCGATGGTGTCGCGAATATCCCCGTTCAGGGCAATCTCGATTACACCAACCACTTTGGTATTGCAGTGGTGCCATTTGTC
GCCAGCTACCAGCCTTCAACAGTTGCCATAAATATGAACAACTTACCTGAAGGCGTTACCGTTTCTGAAAATGTAGTTAA
AGAAACGTGGATTGAAGGAGCGATTGGCTTTAAATCTATGGCCTCTCGTTCCGGCAAAGATCTCAGTGTCATTATTCGCC
AGGCCAGTGGACAGTTCCCCCCGCTGGGTGCGGATATCCAACAAACTACACGGGGTGTTAGCGTGGGAATGGTGAGCGAA
GATGGGCACGCATGGCTTAGCGGCGTGGATGAAAATCAACAGTTTACTGTCCTCTGGGGAGATAACCGGAGTTGCACTAT
TCACCTTCCTGAACGCATGGAAGATACCTCAAAGCGTCTGATTCTCCCGTGTCATTAA

Upstream 100 bases:

>100_bases
GAACTGATCCCAGCCTCAACTGAGCAGACGCTGAACTTCTTCGCCTGGATGGAACAACTTGATCAAGCGACACCAGTAAC
GCCGGGGGCAGTCACGGCGA

Downstream 100 bases:

>100_bases
TTAAGGAAAAGACAATGACAATATGCAAAGGCATGTTCCTTATTCTATTAACAACCAGTCTGTACAGTCATGCTGCTCTC
CAACCAGATCGCACGCGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 845; Mature: 845

Protein sequence:

>845_residues
MQPTYWNISKFNRGGLLPPYLKYLSGMDTVNIYRLSIIFCLAAVIPSALAVEFNLNVLDKSMRDSIDLSLLKEKNAIAPG
EYFVSIVINNNQISSGQKIRWQKAGDQIKACIDSSLMDKFGLKDEVRQSLPIVNNCVDFKSRPEIVFVFDQSNQQLNITI
PQAWLAWHSENWTPPSTWNAGVPGVLLDYNLFASTYRPQEGSNNTNLNAYGTAGLNAGAWRLRSDYQLNQSDSGDHRDES
AIISRTYLFRPLPQPGARLTLGETDLSSNIFEGFSYTGAALTSDDRMLPWELRGYAPQISGIAQTNATVTISHNGRVIYQ
KKVPPGPFIVDDLNQSVQGTLDVKVTEEDGRVNSFQISAASTPFLTRQGQVRYKLAAGRPRASMSHHTENETFLSSEASW
GVLSNTSLYGGMLLSGDDYHSGALGIGQNMLWLGALSFDVTWAKSQFNQQEDEQGYSYRVNHSKRIDATDSLLSLAAYRF
SDRQFHSYANYIDHKYNDADTHDEKQTISISASQPITPLNLNLNVNLLRQRWWNADTTTTANITAGFNVDIGDWKDISVS
TSFNTTHYEDKKRDNQIYFSISLPVGEGGRLGYDLQNSSNTTTHRMSWNDTLDEHNSWGMSAGLQSDRPDNGAQVSGNYQ
HLSSVGEWDLTGTYATNDYTSASSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVANIPVQGNLDYTNHFGIAVVPFV
ASYQPSTVAINMNNLPEGVTVSENVVKETWIEGAIGFKSMASRSGKDLSVIIRQASGQFPPLGADIQQTTRGVSVGMVSE
DGHAWLSGVDENQQFTVLWGDNRSCTIHLPERMEDTSKRLILPCH

Sequences:

>Translated_845_residues
MQPTYWNISKFNRGGLLPPYLKYLSGMDTVNIYRLSIIFCLAAVIPSALAVEFNLNVLDKSMRDSIDLSLLKEKNAIAPG
EYFVSIVINNNQISSGQKIRWQKAGDQIKACIDSSLMDKFGLKDEVRQSLPIVNNCVDFKSRPEIVFVFDQSNQQLNITI
PQAWLAWHSENWTPPSTWNAGVPGVLLDYNLFASTYRPQEGSNNTNLNAYGTAGLNAGAWRLRSDYQLNQSDSGDHRDES
AIISRTYLFRPLPQPGARLTLGETDLSSNIFEGFSYTGAALTSDDRMLPWELRGYAPQISGIAQTNATVTISHNGRVIYQ
KKVPPGPFIVDDLNQSVQGTLDVKVTEEDGRVNSFQISAASTPFLTRQGQVRYKLAAGRPRASMSHHTENETFLSSEASW
GVLSNTSLYGGMLLSGDDYHSGALGIGQNMLWLGALSFDVTWAKSQFNQQEDEQGYSYRVNHSKRIDATDSLLSLAAYRF
SDRQFHSYANYIDHKYNDADTHDEKQTISISASQPITPLNLNLNVNLLRQRWWNADTTTTANITAGFNVDIGDWKDISVS
TSFNTTHYEDKKRDNQIYFSISLPVGEGGRLGYDLQNSSNTTTHRMSWNDTLDEHNSWGMSAGLQSDRPDNGAQVSGNYQ
HLSSVGEWDLTGTYATNDYTSASSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVANIPVQGNLDYTNHFGIAVVPFV
ASYQPSTVAINMNNLPEGVTVSENVVKETWIEGAIGFKSMASRSGKDLSVIIRQASGQFPPLGADIQQTTRGVSVGMVSE
DGHAWLSGVDENQQFTVLWGDNRSCTIHLPERMEDTSKRLILPCH
>Mature_845_residues
MQPTYWNISKFNRGGLLPPYLKYLSGMDTVNIYRLSIIFCLAAVIPSALAVEFNLNVLDKSMRDSIDLSLLKEKNAIAPG
EYFVSIVINNNQISSGQKIRWQKAGDQIKACIDSSLMDKFGLKDEVRQSLPIVNNCVDFKSRPEIVFVFDQSNQQLNITI
PQAWLAWHSENWTPPSTWNAGVPGVLLDYNLFASTYRPQEGSNNTNLNAYGTAGLNAGAWRLRSDYQLNQSDSGDHRDES
AIISRTYLFRPLPQPGARLTLGETDLSSNIFEGFSYTGAALTSDDRMLPWELRGYAPQISGIAQTNATVTISHNGRVIYQ
KKVPPGPFIVDDLNQSVQGTLDVKVTEEDGRVNSFQISAASTPFLTRQGQVRYKLAAGRPRASMSHHTENETFLSSEASW
GVLSNTSLYGGMLLSGDDYHSGALGIGQNMLWLGALSFDVTWAKSQFNQQEDEQGYSYRVNHSKRIDATDSLLSLAAYRF
SDRQFHSYANYIDHKYNDADTHDEKQTISISASQPITPLNLNLNVNLLRQRWWNADTTTTANITAGFNVDIGDWKDISVS
TSFNTTHYEDKKRDNQIYFSISLPVGEGGRLGYDLQNSSNTTTHRMSWNDTLDEHNSWGMSAGLQSDRPDNGAQVSGNYQ
HLSSVGEWDLTGTYATNDYTSASSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVANIPVQGNLDYTNHFGIAVVPFV
ASYQPSTVAINMNNLPEGVTVSENVVKETWIEGAIGFKSMASRSGKDLSVIIRQASGQFPPLGADIQQTTRGVSVGMVSE
DGHAWLSGVDENQQFTVLWGDNRSCTIHLPERMEDTSKRLILPCH

Specific function: Could be involved in the export and assembly of the putative ybgD fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=80.3921568627451, Blast_Score=1364, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=780, Percent_Identity=28.0769230769231, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1790772, Length=865, Percent_Identity=26.9364161849711, Blast_Score=249, Evalue=6e-67,
Organism=Escherichia coli, GI1786744, Length=856, Percent_Identity=26.4018691588785, Blast_Score=245, Evalue=9e-66,
Organism=Escherichia coli, GI1787172, Length=827, Percent_Identity=26.360338573156, Blast_Score=242, Evalue=6e-65,
Organism=Escherichia coli, GI1786332, Length=862, Percent_Identity=26.1020881670534, Blast_Score=236, Evalue=7e-63,
Organism=Escherichia coli, GI1788427, Length=842, Percent_Identity=23.2779097387173, Blast_Score=196, Evalue=7e-51,
Organism=Escherichia coli, GI1789610, Length=808, Percent_Identity=24.1336633663366, Blast_Score=103, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93674; Mature: 93674

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTYWNISKFNRGGLLPPYLKYLSGMDTVNIYRLSIIFCLAAVIPSALAVEFNLNVLDK
CCCCEECHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
SMRDSIDLSLLKEKNAIAPGEYFVSIVINNNQISSGQKIRWQKAGDQIKACIDSSLMDKF
HHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC
GLKDEVRQSLPIVNNCVDFKSRPEIVFVFDQSNQQLNITIPQAWLAWHSENWTPPSTWNA
CCHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCCCC
GVPGVLLDYNLFASTYRPQEGSNNTNLNAYGTAGLNAGAWRLRSDYQLNQSDSGDHRDES
CCCCEEEEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCH
AIISRTYLFRPLPQPGARLTLGETDLSSNIFEGFSYTGAALTSDDRMLPWELRGYAPQIS
HHHEEEEEECCCCCCCCEEEECCCCCCHHHHCCCCCCCCEECCCCCCCCHHHCCCCCCCC
GIAQTNATVTISHNGRVIYQKKVPPGPFIVDDLNQSVQGTLDVKVTEEDGRVNSFQISAA
CEEECCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCEEEEEEECC
STPFLTRQGQVRYKLAAGRPRASMSHHTENETFLSSEASWGVLSNTSLYGGMLLSGDDYH
CCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEECCCEECCEEECCCCCC
SGALGIGQNMLWLGALSFDVTWAKSQFNQQEDEQGYSYRVNHSKRIDATDSLLSLAAYRF
CCCEECCCCEEEEEEEEEEEEEHHHHCCCCHHCCCCEEEECCCCCCCHHHHHHHHHHHHC
SDRQFHSYANYIDHKYNDADTHDEKQTISISASQPITPLNLNLNVNLLRQRWWNADTTTT
CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCCEE
ANITAGFNVDIGDWKDISVSTSFNTTHYEDKKRDNQIYFSISLPVGEGGRLGYDLQNSSN
EEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCC
TTTHRMSWNDTLDEHNSWGMSAGLQSDRPDNGAQVSGNYQHLSSVGEWDLTGTYATNDYT
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCEEEEEECCCCC
SASSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVANIPVQGNLDYTNHFGIAVVPFV
CCCCCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCEEECCEECCCCCCCCCCEEEEEEH
ASYQPSTVAINMNNLPEGVTVSENVVKETWIEGAIGFKSMASRSGKDLSVIIRQASGQFP
HCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCC
PLGADIQQTTRGVSVGMVSEDGHAWLSGVDENQQFTVLWGDNRSCTIHLPERMEDTSKRL
CCCCCHHHHHCCEEEEEEECCCCCEECCCCCCCEEEEEECCCCEEEEECCHHCCCCCCCE
ILPCH
EEECC
>Mature Secondary Structure
MQPTYWNISKFNRGGLLPPYLKYLSGMDTVNIYRLSIIFCLAAVIPSALAVEFNLNVLDK
CCCCEECHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
SMRDSIDLSLLKEKNAIAPGEYFVSIVINNNQISSGQKIRWQKAGDQIKACIDSSLMDKF
HHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEHHCCHHHHHHHHHHHHHHC
GLKDEVRQSLPIVNNCVDFKSRPEIVFVFDQSNQQLNITIPQAWLAWHSENWTPPSTWNA
CCHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCCCC
GVPGVLLDYNLFASTYRPQEGSNNTNLNAYGTAGLNAGAWRLRSDYQLNQSDSGDHRDES
CCCCEEEEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCH
AIISRTYLFRPLPQPGARLTLGETDLSSNIFEGFSYTGAALTSDDRMLPWELRGYAPQIS
HHHEEEEEECCCCCCCCEEEECCCCCCHHHHCCCCCCCCEECCCCCCCCHHHCCCCCCCC
GIAQTNATVTISHNGRVIYQKKVPPGPFIVDDLNQSVQGTLDVKVTEEDGRVNSFQISAA
CEEECCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCEEEEEEECC
STPFLTRQGQVRYKLAAGRPRASMSHHTENETFLSSEASWGVLSNTSLYGGMLLSGDDYH
CCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEECCCEECCEEECCCCCC
SGALGIGQNMLWLGALSFDVTWAKSQFNQQEDEQGYSYRVNHSKRIDATDSLLSLAAYRF
CCCEECCCCEEEEEEEEEEEEEHHHHCCCCHHCCCCEEEECCCCCCCHHHHHHHHHHHHC
SDRQFHSYANYIDHKYNDADTHDEKQTISISASQPITPLNLNLNVNLLRQRWWNADTTTT
CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCCEE
ANITAGFNVDIGDWKDISVSTSFNTTHYEDKKRDNQIYFSISLPVGEGGRLGYDLQNSSN
EEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCC
TTTHRMSWNDTLDEHNSWGMSAGLQSDRPDNGAQVSGNYQHLSSVGEWDLTGTYATNDYT
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHCCCCCCEEEEEECCCCC
SASSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVANIPVQGNLDYTNHFGIAVVPFV
CCCCCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCEEECCEECCCCCCCCCCEEEEEEH
ASYQPSTVAINMNNLPEGVTVSENVVKETWIEGAIGFKSMASRSGKDLSVIIRQASGQFP
HCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCC
PLGADIQQTTRGVSVGMVSEDGHAWLSGVDENQQFTVLWGDNRSCTIHLPERMEDTSKRL
CCCCCHHHHHCCEEEEEEECCCCCEECCCCCCCEEEEEECCCCEEEEECCHHCCCCCCCE
ILPCH
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]