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The map label for this gene is ybgD [H]

Identifier: 218549719

GI number: 218549719

Start: 2455897

End: 2456460

Strand: Direct

Name: ybgD [H]

Synonym: EFER_2396

Alternate gene names: 218549719

Gene position: 2455897-2456460 (Clockwise)

Preceding gene: 218549717

Following gene: 218549720

Centisome position: 53.52

GC content: 43.79

Gene sequence:

>564_bases
ATGTTTAAAGGAAAAACATTGATCGCCACGGCAATAACTTTATTGCTTGCCTCTACTGCTTATGCTGCTGATGAAGGTTC
CGGTGAAATTCATTTCAAAGGGGAAGTCATTGAAGCACCATGTGAAATTAGTCAGAACGACATTGATAAACAAGTTGAAC
TCGGTCAAGTTTCTACCAACCATATTAATCAGGCACACCACAGTGATGCGATTGCCGTTGATATTCATTTAATCCATTGT
GATCTGGAAAATTCTAATAATGGTTCTGGCGGCAAAATCTCCAAAGTCTCCGTTACCTTTGATAGTTCAGCGAAAACGAC
CAATGCGGACCCAATCCTCAGTAATACCAGTACCGGAGAAGCAACGGGTGTCGGTGTTCGCTTAATGAATAAAAATCAGA
GCAATATCACGTTAGGTACTGCGACCCCTGATATTGAACTGATCCCAGCCTCAACTGAGCAGACGCTGAACTTCTTCGCC
TGGATGGAACAACTTGATCAAGCGACACCAGTAACGCCGGGGGCAGTCACGGCGAATGCAACCTACGTACTGGAATATAA
GTAA

Upstream 100 bases:

>100_bases
AACTTAATAATCAATTAAGTATAAGTCGAAATACTTTAGCTTGAATTCCATTTATTATACGAACAGTCGCGATTTCTCAA
TCCACTAAAAGGACTCTGTT

Downstream 100 bases:

>100_bases
GTTCAACCGAGGCGGCCTCCTGCCGCCTTATTTAAAATATTTATCAGGTATGGACACCGTGAATATTTACCGACTCTCTA
TTATTTTCTGTCTGGCGGCG

Product: fimbrial-like adhesin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MFKGKTLIATAITLLLASTAYAADEGSGEIHFKGEVIEAPCEISQNDIDKQVELGQVSTNHINQAHHSDAIAVDIHLIHC
DLENSNNGSGGKISKVSVTFDSSAKTTNADPILSNTSTGEATGVGVRLMNKNQSNITLGTATPDIELIPASTEQTLNFFA
WMEQLDQATPVTPGAVTANATYVLEYK

Sequences:

>Translated_187_residues
MFKGKTLIATAITLLLASTAYAADEGSGEIHFKGEVIEAPCEISQNDIDKQVELGQVSTNHINQAHHSDAIAVDIHLIHC
DLENSNNGSGGKISKVSVTFDSSAKTTNADPILSNTSTGEATGVGVRLMNKNQSNITLGTATPDIELIPASTEQTLNFFA
WMEQLDQATPVTPGAVTANATYVLEYK
>Mature_187_residues
MFKGKTLIATAITLLLASTAYAADEGSGEIHFKGEVIEAPCEISQNDIDKQVELGQVSTNHINQAHHSDAIAVDIHLIHC
DLENSNNGSGGKISKVSVTFDSSAKTTNADPILSNTSTGEATGVGVRLMNKNQSNITLGTATPDIELIPASTEQTLNFFA
WMEQLDQATPVTPGAVTANATYVLEYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=188, Percent_Identity=70.2127659574468, Blast_Score=272, Evalue=8e-75,
Organism=Escherichia coli, GI1789422, Length=189, Percent_Identity=37.5661375661376, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786746, Length=184, Percent_Identity=31.5217391304348, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790769, Length=133, Percent_Identity=33.0827067669173, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19817; Mature: 19817

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKGKTLIATAITLLLASTAYAADEGSGEIHFKGEVIEAPCEISQNDIDKQVELGQVSTN
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCCCCCCCEEEECCCCCH
HINQAHHSDAIAVDIHLIHCDLENSNNGSGGKISKVSVTFDSSAKTTNADPILSNTSTGE
HCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
ATGVGVRLMNKNQSNITLGTATPDIELIPASTEQTLNFFAWMEQLDQATPVTPGAVTANA
CCEEEEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEECCE
TYVLEYK
EEEEEEC
>Mature Secondary Structure
MFKGKTLIATAITLLLASTAYAADEGSGEIHFKGEVIEAPCEISQNDIDKQVELGQVSTN
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCCCCCCCEEEECCCCCH
HINQAHHSDAIAVDIHLIHCDLENSNNGSGGKISKVSVTFDSSAKTTNADPILSNTSTGE
HCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
ATGVGVRLMNKNQSNITLGTATPDIELIPASTEQTLNFFAWMEQLDQATPVTPGAVTANA
CCEEEEEEECCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEECCE
TYVLEYK
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]