Click here to switch to the map view.

The map label for this gene is ybgP [H]

Identifier: 218549721

GI number: 218549721

Start: 2458960

End: 2459715

Strand: Direct

Name: ybgP [H]

Synonym: EFER_2398

Alternate gene names: 218549721

Gene position: 2458960-2459715 (Clockwise)

Preceding gene: 218549720

Following gene: 218549722

Centisome position: 53.59

GC content: 46.3

Gene sequence:

>756_bases
GTGTCATTAATTAAGGAAAAGACAATGACAATATGCAAAGGCATGTTCCTTATTCTATTAACAACCAGTCTGTACAGTCA
TGCTGCTCTCCAACCAGATCGCACGCGCATTGTGTTTGATGCCAACAACAAAGCAACCAGTTTGCGAGTGGAAAACCGCA
GCGATAAACTCCCTTATCTGGCCTACTCATGGATAGAAAACGAAAAGGGCGAGAAAAGCGATGACCTGCTGGTAGCCTTG
CCCCCCATTCAGCGTCTGGAGCCCAAAGCAACTTCCCAGGTGCGTATCGTTAAACAAGCCTCAACCACGCAACTTCCTGC
TGATCGGGAAACGCTGTTTTATTACAATTTACGAGAAATCCCTCCCGCCCCCGATAAAAACAATGATCATGCCGTTTTAC
AAGTTGCCGTCCAGAGCAGAATTAAATTGTTCTGGCGACCTGCTGCATTACGTAAGAAAACCGGCGATCACGTCGAACAA
CAGCTACAGGTTAATCAGCAGAATAACCAACTGATAATGAAAAATCCGACCCCTTATTATCTGACAATCGCCTATCTGGG
GCGGGATGTGAAGGGCGTGCTTCCGGGGTTTAAAAGTATGATGATTGCCCCTTTTAGTACTGCTTCAACGGCTACGGGGA
ATTATACAGGTAATCAGTTTTACCTCGGTTATATGGACGATTACGGTGCATTGCGCATGAATACCCTAAAATGCCAGGGC
GAGTGCCGTTTACAGCCTGTCGAGGAGAATAAATGA

Upstream 100 bases:

>100_bases
ATGAAAATCAACAGTTTACTGTCCTCTGGGGAGATAACCGGAGTTGCACTATTCACCTTCCTGAACGCATGGAAGATACC
TCAAAGCGTCTGATTCTCCC

Downstream 100 bases:

>100_bases
GTCTCTGCAAAAGCGTATTGCTTATCTTTAGCCTGCTTTTTATACCCCTTAAAGCTGCGCTGGCACTGGACTGTTATTTT
GGTAATGCTGGCGGCCCGGT

Product: protein, chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSLIKEKTMTICKGMFLILLTTSLYSHAALQPDRTRIVFDANNKATSLRVENRSDKLPYLAYSWIENEKGEKSDDLLVAL
PPIQRLEPKATSQVRIVKQASTTQLPADRETLFYYNLREIPPAPDKNNDHAVLQVAVQSRIKLFWRPAALRKKTGDHVEQ
QLQVNQQNNQLIMKNPTPYYLTIAYLGRDVKGVLPGFKSMMIAPFSTASTATGNYTGNQFYLGYMDDYGALRMNTLKCQG
ECRLQPVEENK

Sequences:

>Translated_251_residues
MSLIKEKTMTICKGMFLILLTTSLYSHAALQPDRTRIVFDANNKATSLRVENRSDKLPYLAYSWIENEKGEKSDDLLVAL
PPIQRLEPKATSQVRIVKQASTTQLPADRETLFYYNLREIPPAPDKNNDHAVLQVAVQSRIKLFWRPAALRKKTGDHVEQ
QLQVNQQNNQLIMKNPTPYYLTIAYLGRDVKGVLPGFKSMMIAPFSTASTATGNYTGNQFYLGYMDDYGALRMNTLKCQG
ECRLQPVEENK
>Mature_250_residues
SLIKEKTMTICKGMFLILLTTSLYSHAALQPDRTRIVFDANNKATSLRVENRSDKLPYLAYSWIENEKGEKSDDLLVALP
PIQRLEPKATSQVRIVKQASTTQLPADRETLFYYNLREIPPAPDKNNDHAVLQVAVQSRIKLFWRPAALRKKTGDHVEQQ
LQVNQQNNQLIMKNPTPYYLTIAYLGRDVKGVLPGFKSMMIAPFSTASTATGNYTGNQFYLGYMDDYGALRMNTLKCQGE
CRLQPVEENK

Specific function: Could be required for the biogenesis of the putative ybgD fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786936, Length=240, Percent_Identity=80, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI87082203, Length=230, Percent_Identity=40, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI1788677, Length=218, Percent_Identity=38.5321100917431, Blast_Score=153, Evalue=9e-39,
Organism=Escherichia coli, GI1790771, Length=228, Percent_Identity=30.2631578947368, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789532, Length=205, Percent_Identity=33.1707317073171, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786333, Length=262, Percent_Identity=28.6259541984733, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788428, Length=225, Percent_Identity=29.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786743, Length=174, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787171, Length=203, Percent_Identity=33.0049261083744, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87081806, Length=230, Percent_Identity=31.304347826087, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28537; Mature: 28406

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIKEKTMTICKGMFLILLTTSLYSHAALQPDRTRIVFDANNKATSLRVENRSDKLPYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEE
AYSWIENEKGEKSDDLLVALPPIQRLEPKATSQVRIVKQASTTQLPADRETLFYYNLREI
EEEECCCCCCCCCCCEEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEHCCC
PPAPDKNNDHAVLQVAVQSRIKLFWRPAALRKKTGDHVEQQLQVNQQNNQLIMKNPTPYY
CCCCCCCCCHHEEEEEHHHHHHEEECCHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCEE
LTIAYLGRDVKGVLPGFKSMMIAPFSTASTATGNYTGNQFYLGYMDDYGALRMNTLKCQG
EEEEECCCCHHHHCCCCHHHEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC
ECRLQPVEENK
CEEECCCCCCC
>Mature Secondary Structure 
SLIKEKTMTICKGMFLILLTTSLYSHAALQPDRTRIVFDANNKATSLRVENRSDKLPYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCEE
AYSWIENEKGEKSDDLLVALPPIQRLEPKATSQVRIVKQASTTQLPADRETLFYYNLREI
EEEECCCCCCCCCCCEEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEHCCC
PPAPDKNNDHAVLQVAVQSRIKLFWRPAALRKKTGDHVEQQLQVNQQNNQLIMKNPTPYY
CCCCCCCCCHHEEEEEHHHHHHEEECCHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCEE
LTIAYLGRDVKGVLPGFKSMMIAPFSTASTATGNYTGNQFYLGYMDDYGALRMNTLKCQG
EEEEECCCCHHHHCCCCHHHEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC
ECRLQPVEENK
CEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]