| Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
|---|---|
| Accession | NC_011740 |
| Length | 4,588,711 |
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The map label for this gene is yohF [H]
Identifier: 218549552
GI number: 218549552
Start: 2281073
End: 2281834
Strand: Reverse
Name: yohF [H]
Synonym: EFER_2224
Alternate gene names: 218549552
Gene position: 2281834-2281073 (Counterclockwise)
Preceding gene: 218549553
Following gene: 218549550
Centisome position: 49.73
GC content: 56.3
Gene sequence:
>762_bases ATGGCACAGGTCGCGATAATTACCGCCTCCGATTCGGGGATCGGCAAAGAGTGCGCGTTATTACTGGCGCAGCAGGGGTT TGATATTGGCATTACCTGGCACTCCGATGAAGAAGGGGCAAAAGATACTGCGCGTGAGGTGGTTAGTCACGGCGTACGTG CGGAGATCGTGCAGCTCGATCTCGGTAAACTGCCAGAGGGGGCACTGGCGCTGGAGAAACTTATTCAACGGCTGGGGCGC ATCGATGTGCTGGTGAATAATGCGGGCGCAATGACCAAAGCGCCGTTTCTTGATATGGCTTTCGATGAGTGGCGCAAGAT TTTTACCGTTGATGTCGATGGTGCATTCTTATGCTCGCAAATTGCGGCTCGTCAGATGGTGAAACAAGGGCAGGGCGGTC GCATCATCAACATTACGTCGGTACATGAGCATACGCCGCTGCCGGATGCCAGCGCCTATACAGCCGCTAAACATGCACTC GGTGGGCTAACCAAAGCGATGGCGCTTGAGCTGGTCAGGCATAAGATTTTGGTGAACGCAGTCGCGCCTGGGGCGATCGC CACGCCAATGAACGGCATGGATGACGGCGACGTGAAGCCCGACGCGGAGCCTTCGATTCCTCTGCGGCGTTTTGGCGCAA CGCATGAGATTGCCAGCCTGGTGGCGTGGCTGTGCTCAGAGGGCGCGAATTACACCACCGGGCAGTCGTTGATAGTGGAT GGGGGATTTATGCTGGCGAATCCGCAGTTTAAGCCAGAATAG
Upstream 100 bases:
>100_bases AGGAAACGACGCGCCGCGAATTCCAGGAGTTATCTAAATATGACGTAAGTAATCAGCCCGTTTCTATACTTATTGTTTTA GAGACTCCGTGGAGAACTCG
Downstream 100 bases:
>100_bases CGCAGTGAAGTGCGTGGATATTTCAATGGGTAATATTTGGTAGGCATGATAAGACGCGGAAGCGTCGCATCAGGCATGAT GTACCTGATGTCGGATGCGG
Product: acetoin dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGKLPEGALALEKLIQRLGR IDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDGDVKPDAEPSIPLRRFGATHEIASLVAWLCSEGANYTTGQSLIVD GGFMLANPQFKPE
Sequences:
>Translated_253_residues MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGKLPEGALALEKLIQRLGR IDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDGDVKPDAEPSIPLRRFGATHEIASLVAWLCSEGANYTTGQSLIVD GGFMLANPQFKPE >Mature_252_residues AQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGKLPEGALALEKLIQRLGRI DVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALG GLTKAMALELVRHKILVNAVAPGAIATPMNGMDDGDVKPDAEPSIPLRRFGATHEIASLVAWLCSEGANYTTGQSLIVDG GFMLANPQFKPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=30.8943089430894, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=32, Blast_Score=111, Evalue=5e-25, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=32.9268292682927, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI7705925, Length=193, Percent_Identity=35.2331606217617, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=29.8387096774194, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=29.3436293436293, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=29.2181069958848, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=27.3684210526316, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=27.319587628866, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=29.1208791208791, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI4504505, Length=240, Percent_Identity=27.9166666666667, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503301, Length=235, Percent_Identity=23.8297872340426, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI59889578, Length=181, Percent_Identity=30.939226519337, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI210032110, Length=169, Percent_Identity=26.6272189349112, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=98.4189723320158, Blast_Score=511, Evalue=1e-146, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=34.2857142857143, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=34.136546184739, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=30.6122448979592, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=32.9218106995885, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=32.0987654320988, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=31.7460317460317, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=32.7800829875519, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=28.099173553719, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=31.4720812182741, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=264, Percent_Identity=28.030303030303, Blast_Score=87, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=31.0077519379845, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=30.3501945525292, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=33.4600760456274, Blast_Score=115, Evalue=1e-26, Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=33.75, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=33.7448559670782, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.0606060606061, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=28.957528957529, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=256, Percent_Identity=30.078125, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.0322580645161, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=29.1187739463602, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.8300395256917, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=29.9625468164794, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=32.1969696969697, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=28.6259541984733, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.3233082706767, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=29.1187739463602, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=29.6153846153846, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=27.4809160305344, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=26.7175572519084, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=29.1044776119403, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=27.9850746268657, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17568967, Length=213, Percent_Identity=32.3943661971831, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=29.5019157088123, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=27.4809160305344, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=28.0612244897959, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=28.0612244897959, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.90625, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71997099, Length=203, Percent_Identity=29.5566502463054, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=25.4032258064516, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561272, Length=209, Percent_Identity=25.8373205741627, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=26.4, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=24.2914979757085, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=24.6268656716418, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17555612, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI32563809, Length=209, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324126, Length=245, Percent_Identity=25.3061224489796, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=31.2169312169312, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=30.6451612903226, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.1983805668016, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32, Blast_Score=103, Evalue=9e-23, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=30.7692307692308, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=27.5720164609054, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=29.2682926829268, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI18859837, Length=233, Percent_Identity=32.1888412017167, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=27.9352226720648, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=32.1243523316062, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24584744, Length=198, Percent_Identity=30.8080808080808, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI28574402, Length=198, Percent_Identity=30.8080808080808, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24644337, Length=221, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=28.7735849056604, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=29.1457286432161, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=26.2376237623762, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=25.9842519685039, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=26.5625, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24584752, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=226, Percent_Identity=25.2212389380531, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=26.9005847953216, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26921; Mature: 26790
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLD CCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE LGKLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQ CCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEECCHHHHHHH IAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNA HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAPGAIATPMNGMDDGDVKPDAEPSIPLRRFGATHEIASLVAWLCSEGANYTTGQSLIVD CCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEE GGFMLANPQFKPE CCEEEECCCCCCC >Mature Secondary Structure AQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLD CEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE LGKLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQ CCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCEEEEEECCHHHHHHH IAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNA HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAPGAIATPMNGMDDGDVKPDAEPSIPLRRFGATHEIASLVAWLCSEGANYTTGQSLIVD CCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEE GGFMLANPQFKPE CCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]