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The map label for this gene is yohC

Identifier: 218549550

GI number: 218549550

Start: 2279608

End: 2280195

Strand: Reverse

Name: yohC

Synonym: EFER_2222

Alternate gene names: 218549550

Gene position: 2280195-2279608 (Counterclockwise)

Preceding gene: 218549552

Following gene: 218549549

Centisome position: 49.69

GC content: 54.08

Gene sequence:

>588_bases
ATGAGCCATGTCTGGGGACTGTTTTCCCATCCCGATCGTGAAATGCAGGTGATTAATCGCGAAAACGAAACGATTTCTCA
CCATTACACCCACCACGTTTTGCTGATGGCGGCGATTCCGGTGATTTGCGCCTTTATTGGCACCACACAAATTGGCTGGA
ATTTTGGCGATGGCACTATCCTGAAGTTATCCTGGTTTACCGGACTGGCGCTGGCTGTCTTGTTTTATGGCGTTATGCTG
GCTGGGGTCGCGGTGATGGGGCGGGTCATCTGGTGGATGGCGCGCAATTACCCGCAGCGTCCGTCACTTGCGCACTGCAT
GGTCTTCGCGGGCTACGTTGCAACTCCGCTGTTTTTAAGCGGTCTGGTGGCGCTTTACCCGCTGGTCTGGTTGTGTGCGC
TGGTCGGCACGGTGGCGCTGTTTTACACCGGCTACCTGCTTTACCTCGGTATTCCGAGTTTCCTGAATATCAACAAAGAG
GAAGGCCTTAGCTTCTCCAGTTCGACGCTGGCGATAGGCGTGCTGGTACTGGAAGTGCTGCTCGCCCTTACCGTTATACT
ATGGGGCTACGGTTATCGTTTGTTCTAG

Upstream 100 bases:

>100_bases
GTACATCAGACGGTACAAATTACATAAGCGAACAAAAAATAATCACAAGCTGACTTATACTTGAACTGTCAGGTTCATGA
ACTCACAACAAGGGGGCGGT

Downstream 100 bases:

>100_bases
AAAGTTCTTTGACGTTGCATTGCTGGCGTAAATGTCAGCAATGCAGCATTTCCTCACGATTCTCTTTTGACGATCGCACT
TTTTGCTCGTTATGATGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVML
AGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF

Sequences:

>Translated_195_residues
MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVML
AGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF
>Mature_194_residues
SHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLA
GVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEE
GLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082055, Length=195, Percent_Identity=100, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOHC_ECOL6 (P0AD18)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_754555.1
- ProteinModelPortal:   P0AD18
- EnsemblBacteria:   EBESCT00000041288
- GeneID:   1038007
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c2667
- GeneTree:   EBGT00050000010753
- HOGENOM:   HBG306703
- OMA:   LELAAYT
- ProtClustDB:   CLSK880308
- InterPro:   IPR006977

Pfam domain/function: PF04893 Yip1

EC number: NA

Molecular weight: Translated: 21691; Mature: 21560

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2a3fb8a8)-; HASH(0x29f91490)-; HASH(0x295a0c10)-; HASH(0x2a4cf5b4)-; HASH(0x27c2a2f8)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTI
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEE
LKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHH
LALTVILWGYGYRLF
HHHHHHHHHCCHHCH
>Mature Secondary Structure 
SHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICAFIGTTQIGWNFGDGTI
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEE
LKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLAHCMVFAGYVATPLFLS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLSFSSSTLAIGVLVLEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHH
LALTVILWGYGYRLF
HHHHHHHHHCCHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157