Click here to switch to the map view.

The map label for this gene is yadN [H]

Identifier: 218547597

GI number: 218547597

Start: 178300

End: 178884

Strand: Reverse

Name: yadN [H]

Synonym: EFER_0164

Alternate gene names: 218547597

Gene position: 178884-178300 (Counterclockwise)

Preceding gene: 218547598

Following gene: 218547596

Centisome position: 3.9

GC content: 42.91

Gene sequence:

>585_bases
ATGTCTAAAAAATTAGGTTTTGCTCTCTCTGGTCTTATGCTGGCAATGGTTGCAGGTTCCGCTTCTGCTGATATGGACGG
TGGTCAGTTAAATATCAGTGGTCTGGTTGTTGATAATACCTGTGAAACCCGCGTAGACGGCGGTAACAAAGATGGCCTGA
TCCTGCTGCAAACTGCAACTGTTGCGGAAATCTCTGAGGGTGTGCTGGACACTACCGTTGGTGCTAAAGCTAAACCATTC
AGCATCACTGTTGACTGTAGTAAAGCTAATCCGGCACCAGGCAGCACAGCAAAAATGACTTTTGGTTCAGTCTTCTTTGG
TAACAGTAAAGGAACACTGAATAATGACATGTCAATTAATACGCCATCTGACGGTGTTAATATTGCTCTGCACAATATTG
AAGGTTCTACTATTAAGCAGGTTAAAATCAACAATCCTGGCGATATCTATTCCAAAGCACTGGATGCAACTTCCAAATCC
GCAACTTATGATTTTAAAGCATCTTATGTTCGTGCAGATGCGAGCCTGGCAGCCACCGCTGGTTATGTAAAAACTAACAC
TGCATATACCGTTACTTATCAGTAA

Upstream 100 bases:

>100_bases
ATTCATCATTTACAAACTCACTACGGTTTCTCTTGGTTGATTTACTAAAAATTAAATTCAACTTAGAGATCGAACTCATG
GAATATGTTCAAGGATTTTT

Downstream 100 bases:

>100_bases
GCATTTCCATCTATATTCATGAATTGAATACATACAGGGAATAATATTGATATTTCATACTACTCCCTGTTTTTTTAACT
CTGCCAGGAATGGTTTATGT

Product: fimbrial-like adhesin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSKKLGFALSGLMLAMVAGSASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVAEISEGVLDTTVGAKAKPF
SITVDCSKANPAPGSTAKMTFGSVFFGNSKGTLNNDMSINTPSDGVNIALHNIEGSTIKQVKINNPGDIYSKALDATSKS
ATYDFKASYVRADASLAATAGYVKTNTAYTVTYQ

Sequences:

>Translated_194_residues
MSKKLGFALSGLMLAMVAGSASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVAEISEGVLDTTVGAKAKPF
SITVDCSKANPAPGSTAKMTFGSVFFGNSKGTLNNDMSINTPSDGVNIALHNIEGSTIKQVKINNPGDIYSKALDATSKS
ATYDFKASYVRADASLAATAGYVKTNTAYTVTYQ
>Mature_193_residues
SKKLGFALSGLMLAMVAGSASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTATVAEISEGVLDTTVGAKAKPFS
ITVDCSKANPAPGSTAKMTFGSVFFGNSKGTLNNDMSINTPSDGVNIALHNIEGSTIKQVKINNPGDIYSKALDATSKSA
TYDFKASYVRADASLAATAGYVKTNTAYTVTYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786334, Length=194, Percent_Identity=90.2061855670103, Blast_Score=355, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 20010; Mature: 19878

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLGFALSGLMLAMVAGSASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTAT
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
VAEISEGVLDTTVGAKAKPFSITVDCSKANPAPGSTAKMTFGSVFFGNSKGTLNNDMSIN
HHHHHCCCEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEE
TPSDGVNIALHNIEGSTIKQVKINNPGDIYSKALDATSKSATYDFKASYVRADASLAATA
CCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEC
GYVKTNTAYTVTYQ
CEEECCCEEEEEEC
>Mature Secondary Structure 
SKKLGFALSGLMLAMVAGSASADMDGGQLNISGLVVDNTCETRVDGGNKDGLILLQTAT
CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECC
VAEISEGVLDTTVGAKAKPFSITVDCSKANPAPGSTAKMTFGSVFFGNSKGTLNNDMSIN
HHHHHCCCEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEE
TPSDGVNIALHNIEGSTIKQVKINNPGDIYSKALDATSKSATYDFKASYVRADASLAATA
CCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEC
GYVKTNTAYTVTYQ
CEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]