Click here to switch to the map view.

The map label for this gene is yocH [H]

Identifier: 218233993

GI number: 218233993

Start: 3725645

End: 3726595

Strand: Reverse

Name: yocH [H]

Synonym: BCB4264_A3815

Alternate gene names: 218233993

Gene position: 3726595-3725645 (Counterclockwise)

Preceding gene: 218232548

Following gene: 218232488

Centisome position: 68.77

GC content: 37.75

Gene sequence:

>951_bases
ATGAAAAAATTATTAGGTATAGCAACAGCAGCAGTTTTTGGTCTTGGGATTTTTGCGGGTTCTGCTAAAGCGGAAACAAT
TGTAACAACAGACGTATTAAATGTTAGAGAAAACCCAAATGTAGAGTCAAAGCTTGTAGGTAAAGTGTTCAGTGGGAATA
CACTAGATGTTATAAATACAGAAAATGGATGGACAAAAATTAAGTTGAACGGTAAGGAAGCGTTTGTAAGTGCCGATTTT
ACAAAGAGCACATATTATGTAACGGCGGGCGTATTAAATGTTCGTGCTGGAGCGAATACTGATTCTGAAATTTTAGGTAA
ACTTAATAAAAATGATGTGATTGAAACGACGAATCAAGTTCAAAATGAATGGTTACAATTCGACTACAATGGAAAAGTTG
GATATGTTCACGTGCCATTTTTAACAGGAACAGCACCTGTAATCGAAAAGAAAGAGGTTGTAGCTCAAGAAGAAGCGCCA
GCTAGAACAAATACGCCAGTTAAAAATAATACAGTAGTTAAGAATAAAGAGTCTGTTAAGAGTAACGATTCTATTAAGAA
TGTAGAATCAAGTAAACCTGTGGTAAAAGAAAAACCGGCTGCAAAACCAGTTGCAAAATCTACTGAAACAAGTGCGCCTA
CTGGTGGTCGTGAAATTACAGTAGAAGCGACGGCATATACAGCAAATCCGAGTGAGAATGGTTCGTATGGTGGTCGTGTA
TTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATCCGAAAGTAATTCCGCTTGG
ATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTGGAGACACTGGTGGTGCGATTAAAGGAAATCGTATTGATG
TATTAGTCGGTTCAGATGGTAGTGCTAATAGCTGGGGGCGCAAATCTGTAAAAGTGAAAGTTATACAATAG

Upstream 100 bases:

>100_bases
ATCGTATATTACGAATGCTTTGTAATTGTGTGATTTCTAAAAATTCTAAAAATCTGTTGCTATAATGAAAATACGAAAAC
AAAGCAAATGGAGGCTATTC

Downstream 100 bases:

>100_bases
GTTATCGATATTAATATAAAAAGCGGTTGCTTGAAACTATGTAAGCAGCCGCTTTTTATGGATTATTGAAATGGATAAAT
AGTTTTACCTGTAATAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPNVESKLVGKVFSGNTLDVINTENGWTKIKLNGKEAFVSADF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVIEKKEVVAQEEAP
ARTNTPVKNNTVVKNKESVKSNDSIKNVESSKPVVKEKPAAKPVAKSTETSAPTGGREITVEATAYTANPSENGSYGGRV
LTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIQ

Sequences:

>Translated_316_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPNVESKLVGKVFSGNTLDVINTENGWTKIKLNGKEAFVSADF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVIEKKEVVAQEEAP
ARTNTPVKNNTVVKNKESVKSNDSIKNVESSKPVVKEKPAAKPVAKSTETSAPTGGREITVEATAYTANPSENGSYGGRV
LTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIQ
>Mature_316_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPNVESKLVGKVFSGNTLDVINTENGWTKIKLNGKEAFVSADF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVIEKKEVVAQEEAP
ARTNTPVKNNTVVKNKESVKSNDSIKNVESSKPVVKEKPAAKPVAKSTETSAPTGGREITVEATAYTANPSENGSYGGRV
LTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIQ

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 33463; Mature: 33463

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPNVESKLVGKVFSGNTLDVINT
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHEECCCEEEEEEC
ENGWTKIKLNGKEAFVSADFTKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQV
CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHH
QNEWLQFDYNGKVGYVHVPFLTGTAPVIEKKEVVAQEEAPARTNTPVKNNTVVKNKESVK
HHHHEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEECHHHCC
SNDSIKNVESSKPVVKEKPAAKPVAKSTETSAPTGGREITVEATAYTANPSENGSYGGRV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEE
LTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDG
EEEECCCEECCCCEEEEEECCEEEECCCEEEEEECCCEECCCCCCCEECCEEEEEECCCC
SANSWGRKSVKVKVIQ
CCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPNVESKLVGKVFSGNTLDVINT
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHEECCCEEEEEEC
ENGWTKIKLNGKEAFVSADFTKSTYYVTAGVLNVRAGANTDSEILGKLNKNDVIETTNQV
CCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHH
QNEWLQFDYNGKVGYVHVPFLTGTAPVIEKKEVVAQEEAPARTNTPVKNNTVVKNKESVK
HHHHEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEECHHHCC
SNDSIKNVESSKPVVKEKPAAKPVAKSTETSAPTGGREITVEATAYTANPSENGSYGGRV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEE
LTAMGHDLTANPNMKVIAVDPKVIPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDG
EEEECCCEECCCCEEEEEECCEEEECCCEEEEEECCCEECCCCCCCEECCEEEEEECCCC
SANSWGRKSVKVKVIQ
CCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]