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The map label for this gene is rsmE [H]

Identifier: 213692457

GI number: 213692457

Start: 1737511

End: 1738308

Strand: Reverse

Name: rsmE [H]

Synonym: Blon_1586

Alternate gene names: 213692457

Gene position: 1738308-1737511 (Counterclockwise)

Preceding gene: 213692460

Following gene: 213692456

Centisome position: 61.36

GC content: 61.53

Gene sequence:

>798_bases
ATGACTGATGCCCTTTTTCTTTTCGACCCGCAGGTCGACGACGTCCCGGTGAACAGCGACGAACTCCACGCCGGCTGGAA
GCTAACCCTGCCTGCTCACATCAAGCGCCATGCCGTGCAGGCCATGCGACTCAAGGCAGGGGACAGCCTGCAACTTTCCG
ACGGCAACGGCTTGAGAATCCAGGCAGTGATGGCCGATCCTGAAGCCGGACTGGCTGAAGTCGTGGAAGTGGGGCGCGAA
CCCGAGCAGCTCACCCGTTTGGCGCTGATTCAGGCATTGGCGAAAACCGGCCATGATGAGCAGGCCATCGATATGGCTAC
GCAGATCGGCGTCGACCAAGTGGTGCCATGGCAGGCGGACCGATCCATTGCCAAGTGGAAGGTCGGCCGTACAGACAAGA
AGTGGAATTCGGTACTGGATGCCGCCACCGAGCAGTCGCGGCGCGCCTTTAAGCCGCAATTGGAGGCGTGCGCGTCCAGC
AAAGAGGTCGTGGCCATCTGCCGCAGGGCCTGCGTGCATGGCGATGTGGTGATTGTGCTGCATCAGGATGCTACCGATAC
GTGGTCCGGCGTGGAGGAGAAGGTTGCGCAGTTGGTGGAACGCACGCTCCAGGACGGTCGGCCGCGGACTGTCAGTGTGG
TGGTCGGGCCTGAGGGCGGCATCAGTGAGCAGGAGGTAGCTGATTTCGTCAAGGCCGGAGCGGTGAGCTGCGTACTGGGG
CACAATATTCTGAGAGCCGCGACGGCCGGTCCTGTAGCGTTGTCGCTGTTGTCTCGGGTGTTGGGACGTTACGAGTAA

Upstream 100 bases:

>100_bases
CGGGCAGGTGTCGTTTGGACAACGAGTAAATAGCTTAGCATGAAATTACAGGGATGCAATTCGCGCGTGTGCCCGGCGTG
TCGCGTGTAGCCTTGAAGTC

Downstream 100 bases:

>100_bases
CGCCCACGCGCTAAGCTGGTGCGTAGCAACATCAAACCAAGGAGCATGATGAGCGAATCCGACGATTGCCTGTTCTGCAA
GATCATCGCAGGGCAGATTC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQAVMADPEAGLAEVVEVGRE
PEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASS
KEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLG
HNILRAATAGPVALSLLSRVLGRYE

Sequences:

>Translated_265_residues
MTDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQAVMADPEAGLAEVVEVGRE
PEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASS
KEVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLG
HNILRAATAGPVALSLLSRVLGRYE
>Mature_264_residues
TDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRIQAVMADPEAGLAEVVEVGREP
EQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQADRSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASSK
EVVAICRRACVHGDVVIVLHQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLGH
NILRAATAGPVALSLLSRVLGRYE

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 28646; Mature: 28515

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRI
CCCCEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCEEE
QAVMADPEAGLAEVVEVGREPEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQAD
EEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCC
RSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVL
CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCCCCEEEEE
HQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLG
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
HNILRAATAGPVALSLLSRVLGRYE
HHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDALFLFDPQVDDVPVNSDELHAGWKLTLPAHIKRHAVQAMRLKAGDSLQLSDGNGLRI
CCCEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCEEE
QAVMADPEAGLAEVVEVGREPEQLTRLALIQALAKTGHDEQAIDMATQIGVDQVVPWQAD
EEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCC
RSIAKWKVGRTDKKWNSVLDAATEQSRRAFKPQLEACASSKEVVAICRRACVHGDVVIVL
CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCCCCEEEEE
HQDATDTWSGVEEKVAQLVERTLQDGRPRTVSVVVGPEGGISEQEVADFVKAGAVSCVLG
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
HNILRAATAGPVALSLLSRVLGRYE
HHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]