| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692242
Identifier: 213692242
GI number: 213692242
Start: 1531886
End: 1532707
Strand: Reverse
Name: 213692242
Synonym: Blon_1362
Alternate gene names: NA
Gene position: 1532707-1531886 (Counterclockwise)
Preceding gene: 213692243
Following gene: 213692241
Centisome position: 54.11
GC content: 53.28
Gene sequence:
>822_bases ATGGCACGTAAAGCACAATCAGACAACATGCTGGAGAAAATGCGCGACCAGCATGTACAAGACAAGGTCAACGACCGGAT GGAAACCGGGTCGTTTCCCACGGTGCGTAAGAAGCCCCGGAAGGATCTCAACCGTGCCAGCAACAAATCACGGTTACTAT CCTCGATTCTCATCGCTCTGATGTGCGCGTTGTTGGGTTTCGCCTACATGAGCCAGATCAATAACACGAAATCCACGTAC GAAACGATGGACGAGAGTGAACTGGTAAGGCTGCTGAACGAGTCGAATACGCAAATCTCCAATCTCGAGCAGCGTAAAAC CCAGTTGAACAGCCAGCTCAACTCGCTGAAATCGGCGGCTAACGAGCAGGAGCAGGCGCGTAAGATCGCCAAGCAAAACG AGGAGACCAGCGGCTTGATTTCCGGCAGACTCCCGGCAAAGGGTCAAGGCGTGACCATCCGAATCGGACGAGGCTCGACG ACTAAAGTGGACGCCTCAATCATGTTCAACCTTATCGAGGAACTTCGCAATGCCGGTGCCGAGGTAATCGCCATCAATAA CGTGCGCGTCATCACCTCCACCTACATTCAGGACGCCGAGGAAGGTTTGATTGTGGATGGCACCACCATCAAGCCCACAT ACACAGTGAAGGCCATTGGCAATCCGCAGGAACTGTCCAACGCAGTCGATATCGCCGGCGGTGTGGGCGCTCAGCTCCAG GTGAAATACGGGTCCAACGTCAACGTACAGCCTTCTGACAGCATCATTATCGACGAAGTACGCGAAGCTACGCAAAACCA GTATGCAAAGACGGTAGAATAG
Upstream 100 bases:
>100_bases GCTGCAGACAGCCGTCATCGTCGTACTCGGCATCCGCATCTTCTCCAACGTGTCCGCGATCAGACGCTTCATCTTCCGAG GCTGACAAGGGTACTGACGT
Downstream 100 bases:
>100_bases GAGATTATGACCAACCCGATTCCTAGCGCAGGCGAAACCACCATTATCGGCCTGCCCGCGATTAATGTACTGCCCATTAC CACCACCGGCGATCGACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MARKAQSDNMLEKMRDQHVQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLLSSILIALMCALLGFAYMSQINNTKSTY ETMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAANEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGST TKVDASIMFNLIEELRNAGAEVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYTVKAIGNPQELSNAVDIAGGVGAQLQ VKYGSNVNVQPSDSIIIDEVREATQNQYAKTVE
Sequences:
>Translated_273_residues MARKAQSDNMLEKMRDQHVQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLLSSILIALMCALLGFAYMSQINNTKSTY ETMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAANEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGST TKVDASIMFNLIEELRNAGAEVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYTVKAIGNPQELSNAVDIAGGVGAQLQ VKYGSNVNVQPSDSIIIDEVREATQNQYAKTVE >Mature_272_residues ARKAQSDNMLEKMRDQHVQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLLSSILIALMCALLGFAYMSQINNTKSTYE TMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAANEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGSTT KVDASIMFNLIEELRNAGAEVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYTVKAIGNPQELSNAVDIAGGVGAQLQV KYGSNVNVQPSDSIIIDEVREATQNQYAKTVE
Specific function: Unknown
COG id: COG3879
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0749 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010273 [H]
Pfam domain/function: PF05949 DUF881 [H]
EC number: NA
Molecular weight: Translated: 30076; Mature: 29945
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKAQSDNMLEKMRDQHVQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLLSSILIAL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHH MCALLGFAYMSQINNTKSTYETMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAA HHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH NEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGSTTKVDASIMFNLIEELRNAGA HHHHHHHHHHHCCCHHCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC EVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYTVKAIGNPQELSNAVDIAGGVGAQLQ EEEEECCEEEEHHHHHHHCCCCEEEECCEECCEEEEEECCCHHHHHHHHHHCCCCCCEEE VKYGSNVNVQPSDSIIIDEVREATQNQYAKTVE EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ARKAQSDNMLEKMRDQHVQDKVNDRMETGSFPTVRKKPRKDLNRASNKSRLLSSILIAL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHH MCALLGFAYMSQINNTKSTYETMDESELVRLLNESNTQISNLEQRKTQLNSQLNSLKSAA HHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH NEQEQARKIAKQNEETSGLISGRLPAKGQGVTIRIGRGSTTKVDASIMFNLIEELRNAGA HHHHHHHHHHHCCCHHCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC EVIAINNVRVITSTYIQDAEEGLIVDGTTIKPTYTVKAIGNPQELSNAVDIAGGVGAQLQ EEEEECCEEEEHHHHHHHCCCCEEEECCEECCEEEEEECCCHHHHHHHHHHCCCCCCEEE VKYGSNVNVQPSDSIIIDEVREATQNQYAKTVE EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]