| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is 213692241
Identifier: 213692241
GI number: 213692241
Start: 1531436
End: 1531879
Strand: Reverse
Name: 213692241
Synonym: Blon_1361
Alternate gene names: NA
Gene position: 1531879-1531436 (Counterclockwise)
Preceding gene: 213692242
Following gene: 213692240
Centisome position: 54.08
GC content: 54.5
Gene sequence:
>444_bases ATGACCAACCCGATTCCTAGCGCAGGCGAAACCACCATTATCGGCCTGCCCGCGATTAATGTACTGCCCATTACCACCAC CGGCGATCGACCGCTGACTCAAGAGGATCTGGACACCATCACCAGATTGTCCGAGGGAACGGCATTGCTGATTTCCGCCA GGGGAGCGGTCTCAGGTTCTCGTTACTTGCTTGACGAGGATGAAATCACCGTCGGTCGTGATCCGCGAGCTGATATTCTG CTCGACGACTCCACCGTATCCCGTCAGCATGCCGTGTTCCGCAGGGTCAACGGTCAGTTCTTTGTGGTTGACGCAGGAAG TCTGAACGGCACCTACGTGAACCGTCAGCGTGTTGATCAGGCGACGTTGAAGAACGGCGACGAAATCATGATCGGTAAAT TCCGCCTCGTGTTCTTCACGAAATCTGCCATTATTTCCCAATAG
Upstream 100 bases:
>100_bases CGGGTCCAACGTCAACGTACAGCCTTCTGACAGCATCATTATCGACGAAGTACGCGAAGCTACGCAAAACCAGTATGCAA AGACGGTAGAATAGGAGATT
Downstream 100 bases:
>100_bases TCCACACCTAGCATGGGGTTAGACTGATTGCAGAAATTGCAATCATGTGATTACACCAGTGTGAGTCATATGCGAGACAC GCATGAGTTAGGGGGGGTGC
Product: FHA domain containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTNPIPSAGETTIIGLPAINVLPITTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGSRYLLDEDEITVGRDPRADIL LDDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQATLKNGDEIMIGKFRLVFFTKSAIISQ
Sequences:
>Translated_147_residues MTNPIPSAGETTIIGLPAINVLPITTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGSRYLLDEDEITVGRDPRADIL LDDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQATLKNGDEIMIGKFRLVFFTKSAIISQ >Mature_146_residues TNPIPSAGETTIIGLPAINVLPITTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGSRYLLDEDEITVGRDPRADILL DDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQATLKNGDEIMIGKFRLVFFTKSAIISQ
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FHA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000253 - InterPro: IPR008984 [H]
Pfam domain/function: PF00498 FHA [H]
EC number: NA
Molecular weight: Translated: 16006; Mature: 15875
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPIPSAGETTIIGLPAINVLPITTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGS CCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC RYLLDEDEITVGRDPRADILLDDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQ EEEECCCCEEECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCEEECHHHCCH ATLKNGDEIMIGKFRLVFFTKSAIISQ HHHCCCCEEEEEEEEEEEEECCHHCCC >Mature Secondary Structure TNPIPSAGETTIIGLPAINVLPITTTGDRPLTQEDLDTITRLSEGTALLISARGAVSGS CCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC RYLLDEDEITVGRDPRADILLDDSTVSRQHAVFRRVNGQFFVVDAGSLNGTYVNRQRVDQ EEEECCCCEEECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCEEECHHHCCH ATLKNGDEIMIGKFRLVFFTKSAIISQ HHHCCCCEEEEEEEEEEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]