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The map label for this gene is ybaK [H]

Identifier: 213691791

GI number: 213691791

Start: 1064666

End: 1065208

Strand: Reverse

Name: ybaK [H]

Synonym: Blon_0899

Alternate gene names: 213691791

Gene position: 1065208-1064666 (Counterclockwise)

Preceding gene: 213691792

Following gene: 213691789

Centisome position: 37.6

GC content: 58.01

Gene sequence:

>543_bases
GTGCGGGGGTCTCTTCGTAGTAGAACGGTAATCATGGCAAAGAAAAGCAAGCATGATAAGGGCGTGGGTTCCACTCCGGC
GACAGTCCAACTGGAGAAGGCGGGCGTGGAATTCCACGTATACGAATACGAGCACTCCAACGACCATATGGATGACGGCT
ACGGCGTGGAAGCGGCCACCAAGCTCGGCTTCGACGAGCATCAGGTGTTCAAAACCCTAATGGCGGACACCGGTTCGGAG
CGTGTGGTAGGCGTGGTACCAGTCAGCGGACATATGGACCTGAAGGCATTGGCCGCAGCCGTAGGTGCCAAGAAGGCCTC
TATGGCCGATCCCAAGGTCGCGATGCGTGAATCCGGCTATGTGGTAGGTGGCATCTCGCCGTTAGGCCAGAAGACACGTC
ATAAGACTGTGTTGGATGAAAGCGCCCTGCAATTCGACCAGATTCTGGTCTCCGGCGGCAAACGCGGACTGTCCGTGGGG
GTGAACCCGCAGGACCTGCTGAAGGTGATGAACGCCATTGCCGCACCAATCGGCACGTGGTGA

Upstream 100 bases:

>100_bases
GATCCGTACCCTGCTGTACTTCGCTGAGATCTCCGAGTGAACCACTGCGGTCTAGGCCGCTACGGTTCGTTTGAGAACTA
AGCTGTGAGACCCCCGCCTT

Downstream 100 bases:

>100_bases
CCGTTCTTGGCTTCCCTCGGTGAGGGGAGCCAAGGATGACTATTTCTTCCTACGCAACTCCGCCGGCAACACGAAGTGCA
TGTTTTCTTTGATGGTTTCG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRGSLRSRTVIMAKKSKHDKGVGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFKTLMADTGSE
RVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVG
VNPQDLLKVMNAIAAPIGTW

Sequences:

>Translated_180_residues
MRGSLRSRTVIMAKKSKHDKGVGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFKTLMADTGSE
RVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVG
VNPQDLLKVMNAIAAPIGTW
>Mature_180_residues
MRGSLRSRTVIMAKKSKHDKGVGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFKTLMADTGSE
RVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVG
VNPQDLLKVMNAIAAPIGTW

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=47.1337579617834, Blast_Score=136, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 19174; Mature: 19174

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSLRSRTVIMAKKSKHDKGVGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAAT
CCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHH
KLGFDEHQVFKTLMADTGSERVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGY
HCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEHHCCCE
VVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVGVNPQDLLKVMNAIAAPIGTW
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRGSLRSRTVIMAKKSKHDKGVGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAAT
CCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHH
KLGFDEHQVFKTLMADTGSERVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGY
HCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEHHCCCE
VVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVGVNPQDLLKVMNAIAAPIGTW
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]