| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is gap [H]
Identifier: 213691792
GI number: 213691792
Start: 1065269
End: 1066327
Strand: Reverse
Name: gap [H]
Synonym: Blon_0900
Alternate gene names: 213691792
Gene position: 1066327-1065269 (Counterclockwise)
Preceding gene: 213691793
Following gene: 213691791
Centisome position: 37.64
GC content: 61.95
Gene sequence:
>1059_bases ATGACAGTTAAGATTGGTATCAACGGCTTCGGTCGCATTGGTCGTCTCGCCTTCCGTCGCATCTTCGAGCTGCAGGCTCG CGGCGGCCAGGCTGGTGACATTGAAGTTGCCGCCATCAACGATCTGACCACCCCGGCTACCCTGGCTTACCTGCTGAAGT ACGACAGCACCCACGGCACCTTCCGTCATGACGATGGCACTCCGGTTGACGTCAAGGCCACCGAAGACTCCATCATCGTC GACGGCAAGGAATACAAGGTCTACGCCGAGAAGGACGCCAACAACATTCCGTGGGTCAAGAACGACGGTGTCGAGTACGT GCTCGAGTGCACCGGCTTCTACACCTCCGCCGAGAAGTCCCAGGCTCACATCAACGCTGGCGCCAAGAAGGTCCTGATCT CCGCCCCGGCCAAGGATGACACCACCCCGACCGTTGTGTTCGGCGTGAACCACGACATCCTCAAGGCTTCCGACGTGATC GTCTCCGCCGGCTCCTGCACCACCAACTCCATGGCCGCCATGGTCAAGCTGCTGGACGAGAAGTTCGGCATCAAGGCCGG CTTCATGACCACCATCCACGCCTACACCGGCACCCAGATGCTGCTCGATGGCCCGCGTGGCACCAAGACCGGCCGCAACC TGCGCGCCGCCGCCATCAACACCATCGCCCACTCCACCGGCGCTGCCAAGGCCATCGGCAAGGTCGTTCCGTCCGTGAAC GGCAAGCTGCAGGGCCACGCCCAGCGCGTCCAGGTCCCGGACGGCTCCGTCACCGAGCTGACCACCGTGCTGAACACCGA GACCACCGCCGACGAGATCAACGAAGCCTTCAAGGCTGCCTTCTCCGACACCGAGTACTACGGCTACAACGATGAGGGCA TCGTCTCCTCCGACATTCTCGGCGACACCCACGGTGGCGTGTTCGACCCGACCCAGACCGACGTCAACACCATTGACGGC GTGACCCTGGCTCGCACCGTGTCCTTCTACGACAACGAGTACGGCTTCACCTCCAACATGATCCGTACCCTGCTGTACTT CGCTGAGATCTCCGAGTGA
Upstream 100 bases:
>100_bases GTTGCCATGTGTACAGAGTCGGCATTACAGTAGCAACTGTTGGTAAACAATGGCCCGGTGTGCCAAAGCGCGCCAAGGCC ACCCTACAAGGGAGAATTAC
Downstream 100 bases:
>100_bases ACCACTGCGGTCTAGGCCGCTACGGTTCGTTTGAGAACTAAGCTGTGAGACCCCCGCCTTGTGCGGGGGTCTCTTCGTAG TAGAACGGTAATCATGGCAA
Product: glyceraldehyde-3-phosphate dehydrogenase, type I
Products: NA
Alternate protein names: GAPDH [H]
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MTVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGTFRHDDGTPVDVKATEDSIIV DGKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKSQAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVI VSAGSCTTNSMAAMVKLLDEKFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVN GKLQGHAQRVQVPDGSVTELTTVLNTETTADEINEAFKAAFSDTEYYGYNDEGIVSSDILGDTHGGVFDPTQTDVNTIDG VTLARTVSFYDNEYGFTSNMIRTLLYFAEISE
Sequences:
>Translated_352_residues MTVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGTFRHDDGTPVDVKATEDSIIV DGKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKSQAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVI VSAGSCTTNSMAAMVKLLDEKFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVN GKLQGHAQRVQVPDGSVTELTTVLNTETTADEINEAFKAAFSDTEYYGYNDEGIVSSDILGDTHGGVFDPTQTDVNTIDG VTLARTVSFYDNEYGFTSNMIRTLLYFAEISE >Mature_351_residues TVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGTFRHDDGTPVDVKATEDSIIVD GKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKSQAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVIV SAGSCTTNSMAAMVKLLDEKFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVNG KLQGHAQRVQVPDGSVTELTTVLNTETTADEINEAFKAAFSDTEYYGYNDEGIVSSDILGDTHGGVFDPTQTDVNTIDGV TLARTVSFYDNEYGFTSNMIRTLLYFAEISE
Specific function: Second phase of glycolysis; first step. [C]
COG id: COG0057
COG function: function code G; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI7657116, Length=347, Percent_Identity=42.0749279538905, Blast_Score=244, Evalue=1e-64, Organism=Homo sapiens, GI7669492, Length=353, Percent_Identity=40.7932011331445, Blast_Score=243, Evalue=2e-64, Organism=Escherichia coli, GI1788079, Length=356, Percent_Identity=43.8202247191011, Blast_Score=253, Evalue=1e-68, Organism=Escherichia coli, GI1789295, Length=354, Percent_Identity=37.5706214689266, Blast_Score=223, Evalue=1e-59, Organism=Caenorhabditis elegans, GI17534677, Length=357, Percent_Identity=43.9775910364146, Blast_Score=243, Evalue=9e-65, Organism=Caenorhabditis elegans, GI17534679, Length=356, Percent_Identity=43.8202247191011, Blast_Score=243, Evalue=1e-64, Organism=Caenorhabditis elegans, GI32566163, Length=355, Percent_Identity=42.2535211267606, Blast_Score=239, Evalue=2e-63, Organism=Caenorhabditis elegans, GI17568413, Length=355, Percent_Identity=42.2535211267606, Blast_Score=239, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6322409, Length=358, Percent_Identity=41.6201117318436, Blast_Score=252, Evalue=7e-68, Organism=Saccharomyces cerevisiae, GI6321631, Length=358, Percent_Identity=41.8994413407821, Blast_Score=250, Evalue=2e-67, Organism=Saccharomyces cerevisiae, GI6322468, Length=358, Percent_Identity=41.0614525139665, Blast_Score=243, Evalue=2e-65, Organism=Drosophila melanogaster, GI17933600, Length=347, Percent_Identity=42.9394812680115, Blast_Score=248, Evalue=5e-66, Organism=Drosophila melanogaster, GI18110149, Length=347, Percent_Identity=42.9394812680115, Blast_Score=248, Evalue=5e-66, Organism=Drosophila melanogaster, GI19922412, Length=346, Percent_Identity=41.0404624277457, Blast_Score=245, Evalue=3e-65, Organism=Drosophila melanogaster, GI85725000, Length=349, Percent_Identity=42.9799426934097, Blast_Score=244, Evalue=5e-65, Organism=Drosophila melanogaster, GI22023983, Length=349, Percent_Identity=42.9799426934097, Blast_Score=244, Evalue=5e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020831 - InterPro: IPR020829 - InterPro: IPR020828 - InterPro: IPR006424 - InterPro: IPR016040 [H]
Pfam domain/function: PF02800 Gp_dh_C; PF00044 Gp_dh_N [H]
EC number: =1.2.1.12 [H]
Molecular weight: Translated: 37789; Mature: 37657
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGT CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHEECCCCCC FRHDDGTPVDVKATEDSIIVDGKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKS EECCCCCEEEEEECCCCEEECCCEEEEEEECCCCCCCEEECCCCEEEEEECCCCCCCCCC QAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVIVSAGSCTTNSMAAMVKLLDE HHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCEECCCEEEECCCCCCHHHHHHHHHHHH KFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVN HHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHCCCCC GKLQGHAQRVQVPDGSVTELTTVLNTETTADEINEAFKAAFSDTEYYGYNDEGIVSSDIL CCCCCCEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCEECCCC GDTHGGVFDPTQTDVNTIDGVTLARTVSFYDNEYGFTSNMIRTLLYFAEISE CCCCCCCCCCCCCCCHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TVKIGINGFGRIGRLAFRRIFELQARGGQAGDIEVAAINDLTTPATLAYLLKYDSTHGT EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHEECCCCCC FRHDDGTPVDVKATEDSIIVDGKEYKVYAEKDANNIPWVKNDGVEYVLECTGFYTSAEKS EECCCCCEEEEEECCCCEEECCCEEEEEEECCCCCCCEEECCCCEEEEEECCCCCCCCCC QAHINAGAKKVLISAPAKDDTTPTVVFGVNHDILKASDVIVSAGSCTTNSMAAMVKLLDE HHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCEECCCEEEECCCCCCHHHHHHHHHHHH KFGIKAGFMTTIHAYTGTQMLLDGPRGTKTGRNLRAAAINTIAHSTGAAKAIGKVVPSVN HHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHCCCCC GKLQGHAQRVQVPDGSVTELTTVLNTETTADEINEAFKAAFSDTEYYGYNDEGIVSSDIL CCCCCCEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCEECCCC GDTHGGVFDPTQTDVNTIDGVTLARTVSFYDNEYGFTSNMIRTLLYFAEISE CCCCCCCCCCCCCCCHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579064 [H]